PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0395s0029.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 174aa MW: 19976 Da PI: 10.0247

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0395s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.1	6.3e-27	54	102	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++i+ledl++yF+lpik+A+k+L+v+lTvLK++CR++GI+RWPhRkik Kaladp0395s0029.1.p 54 SRIRLEDLAQYFDLPIKEASKHLKVGLTVLKKKCREFGIPRWPHRKIKC 102 689********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.474	38	124	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-22	56	101	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSEVHQLRRT GHGLDLDLNL PPYSESSLSD SQSTENDSSD SVCESKRAES KVASRIRLED 60 LAQYFDLPIK EASKHLKVGL TVLKKKCREF GIPRWPHRKI KCLDGLIHTL EEEVERQLQD 120 NKAVALAVAN KKRMLESEKG TLKRKPFMEL QSETKRLRQD VYKRRFLARA CKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024025777.1	1e-62	protein RKD5
Swissprot	O81791	3e-44	RKD5_ARATH; Protein RKD5
TrEMBL	A0A067LHU7	2e-60	A0A067LHU7_JATCU; Uncharacterized protein
STRING	XP_002521715.1	1e-59	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kaladp0395s0029.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]