PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0395s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 285aa MW: 31777.2 Da PI: 6.0026 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 6e-21 | 102 | 162 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F k n +ps++++++++++l +++e++V++WFqNrRa+ k+ Kaladp0395s0025.1.p 102 RQRWAPTPAQLQILENIFDKgNGTPSKQKIKDITSELsqhgQVSETNVYNWFQNRRARAKR 162 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.2 | 1.5e-32 | 101 | 164 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+++++NV++WFQNr+aR ++kq Kaladp0395s0025.1.p 101 ARQRWAPTPAQLQILENIFDKGNGTPSKQKIKDITSELSQHGQVSETNVYNWFQNRRARAKRKQ 164 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 96 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.884 | 98 | 163 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-14 | 100 | 167 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-18 | 101 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.02E-13 | 102 | 164 | No hit | No description |
Pfam | PF00046 | 1.0E-18 | 102 | 162 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEWEKQPPQH HHHHVHSHGG DALIGEGAAA AAAGLLQEQL VVMTDEQIEI LRKQIAVYTV 60 LCDKLVEMHR SLSSQRDLSG VRFGNTYCDQ LLISSGHKIS ARQRWAPTPA QLQILENIFD 120 KGNGTPSKQK IKDITSELSQ HGQVSETNVY NWFQNRRARA KRKQTVPATN NNETDGIKEV 180 DSSNEKKAKE ENFQSHQIPC SLSDDSCYQS SAMNSDLHSF DPLSSKAEAM FSSEDDLKPP 240 TTLGDISFYD SILSNRRVDQ LSGAVEVEGG YHPYHQTDDY NLMG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 163 | RRARAKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893569.1 | 1e-108 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 4e-79 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2R6Q2B6 | 1e-106 | A0A2R6Q2B6_ACTCH; WUSCHEL-related homeobox like | ||||
STRING | PGSC0003DMT400003980 | 1e-107 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 6e-67 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0395s0025.1.p |
Publications ? help Back to Top | |||
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