PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0278s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 1029aa    MW: 116774 Da    PI: 8.2098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0278s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07382425346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rWT  Ed+ l+  vk+  + +W  Ia  +g++Rt+ qc  r+q 
  Kaladp0278s0008.1.p 382 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 425
                          9***************************************9995 PP
2Myb_DNA-binding35.22.9e-11434477246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            W +eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Kaladp0278s0008.1.p 434 REWEEEEDARLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 477
                          68*****************************.***********98 PP
3Myb_DNA-binding43.38.3e-14487531247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          grWT +Ed++ +  vk++G ++W++Ia+ ++ gRt  qc++rw + 
  Kaladp0278s0008.1.p 487 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 531
                          8******************************.***********986 PP
4Myb_DNA-binding42.31.7e-13540581346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT++Ed++l  a++++    W+++a++++  Rt++qc+ rw  
  Kaladp0278s0008.1.p 540 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 581
                          8*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.331278374IPR017877Myb-like domain
SMARTSM007170.44279376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-7282298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-7347386IPR009057Homeodomain-like
SuperFamilySSF466899.18E-14357428IPR009057Homeodomain-like
PROSITE profilePS500908.362375427IPR017877Myb-like domain
SMARTSM007171.1E-4379429IPR001005SANT/Myb domain
PfamPF139218.8E-11383444No hitNo description
Gene3DG3DSA:1.10.10.601.7E-11387435IPR009057Homeodomain-like
SuperFamilySSF466892.9E-17412481IPR009057Homeodomain-like
PROSITE profilePS5129413.49428479IPR017930Myb domain
SMARTSM007171.4E-10432481IPR001005SANT/Myb domain
CDDcd001677.47E-9435479No hitNo description
Gene3DG3DSA:1.10.10.605.2E-15436482IPR009057Homeodomain-like
PROSITE profilePS5129419.779480536IPR017930Myb domain
SuperFamilySSF466898.11E-26483579IPR009057Homeodomain-like
SMARTSM007172.2E-10485534IPR001005SANT/Myb domain
PfamPF002493.4E-12487531IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-18487537IPR009057Homeodomain-like
CDDcd001678.58E-10488530No hitNo description
SMARTSM007178.0E-10537585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-16538582IPR009057Homeodomain-like
PROSITE profilePS5129414.036539587IPR017930Myb domain
CDDcd001674.03E-10540582No hitNo description
PfamPF002491.5E-11540580IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MAAHLTTDGG GDEKKVGPEE EAFSGSENDD EFDQDMESLR RACMLAGTDL ADLNPPALTL  60
PPHSDSDSDM DDYELARRVC QRLAVTADFE HKPMSMKPLS VVPPDDSDDG EDDFATLRAV  120
QKRFSSYDQK TERSGMENCI QKSEQDSDYL ERHQPDMHEP TLLPVKGSGF PRPAQLLLDS  180
IKKNRLCQKL IHNRLIQIEA RIEESKKLKD RVKILKDFQV STRKRVGLVL SQKKDHRVQL  240
ISAPKRGEKK ASAMKFGPED NRDVAFYKDA ITKFPLALQR QRWSNEERDN LRKGIKQEFQ  300
KALLEKSVDL ISYSEGSYGI SSDIDNVMAS IKGLEITPEN IRAYLPKVNW DNFASIYHQG  360
RSGAECEARW LNWEDPLRNN TRWTRTEDKE LLLIVKEKEM SNWIDIAVSL GTNRTPFQCL  420
ARFQRSLNAQ MVKREWEEEE DARLCAAVRV FGESNWQMVA SVLDKRTGTQ CSNRWKKSLN  480
PARVRVGRWT IDEDKRMKVS VKLFGAKCWS KIAQFVPGRT QVQCRERWVN CLDPSLNWDP  540
WTEDEDLKLM TAITEYNYCW SKVAACIPPR TDNQCRRRWM VLCPDDVYRL QAAKKIQQVA  600
LISNFVDRET ERPDLGPEDF VPPLILCPAF EPYSEEPTNK RKRKRREKRA SPMNNAEYNM  660
GCSDSQKKKR CPRRRKEAQV DNEATLGAVD VNEATEAVIC LNEYVGTVEN STIVHPGSFE  720
CNEQGKADSS LYLELEPTDT GDEGKCGRSN YLKRKKYKPR RKARAENVPV QSKAFLPAAQ  780
SESMLMNHSF SHEIPVENNT TSTQKRRTTI KQNKKKSCSI YKKNDYEFAA GTLSLQMQTP  840
DKSASIPGAI VATSKSCKRE RVTASSSLKD AVSFHRPSSC SCCLESIVCH QGAVNGTRVN  900
GELIAGKAAA CLEENDFIPL ASLGKRDKNF SQNEAEYAQE ANSRSEMNNK FCCEQPATSL  960
GEDDSLALTS FIKRKRNVCN ARIENGHNVD KGRKMEIISV EQVGAGLNED DIPLALFIKK  1020
VKRVKEKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-283815792151MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-283815792151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1639645KRKRKRR
2640645RKRKRR
3640648RKRKRREKR
4642647RKRREK
5671675PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278062.20.0PREDICTED: snRNA-activating protein complex subunit 4 isoform X2
TrEMBLA0A1U7YTW80.0A0A1U7YTW8_NELNU; uncharacterized protein LOC104587774 isoform X1
STRINGXP_010243797.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-159myb domain protein 4r1