PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0192s0035.5.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 382aa MW: 42085.5 Da PI: 7.5234

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0192s0035.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Kaladp0192s0035.5.p 34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.801	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-32	31	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	33	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	36	86	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-21	125	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MFHSKKPSSM NNSPHERAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA 60 TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFNEHS LKDALELQRS NTSSSGMMGR 120 NMNEMQLEVQ RRLHEQLEVQ RHLQLRIEAQ GKYMQAILEK ACQTLAGENN HNMASGSSSY 180 NNMKAGIGNN QGVGGQHHQD LDAIKDFASL GFPSLLDLSI YGQAAAGGDQ IDLHQSNFDS 240 NDTDNSRPPS MDVFIHDPNT NDDAICLGNP KKRPSPYISS SGNGKGPLLW SDDLRLQDLG 300 TTTTHSCHDI QIGPPPSTSP AMEETLFETK PMSLNGDPMM GEKAIKLERP SPRRVPHVSS 360 VDRMMNPVMS MSQGRSSSPF G*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MFHSKKPSSM NNSPHERAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFNEHS LKDALELQRS NTSSSGMMGR  120
NMNEMQLEVQ RRLHEQLEVQ RHLQLRIEAQ GKYMQAILEK ACQTLAGENN HNMASGSSSY  180
NNMKAGIGNN QGVGGQHHQD LDAIKDFASL GFPSLLDLSI YGQAAAGGDQ IDLHQSNFDS  240
NDTDNSRPPS MDVFIHDPNT NDDAICLGNP KKRPSPYISS SGNGKGPLLW SDDLRLQDLG  300
TTTTHSCHDI QIGPPPSTSP AMEETLFETK PMSLNGDPMM GEKAIKLERP SPRRVPHVSS  360
VDRMMNPVMS MSQGRSSSPF G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024198168.1	1e-147	myb family transcription factor APL isoform X1
Swissprot	Q9SAK5	1e-117	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2P6Q820	1e-146	A0A2P6Q820_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_008226001.1	1e-146	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-118	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0192s0035.5.p

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]