PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0192s0035.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 437aa    MW: 48394.7 Da    PI: 9.0592
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0192s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-3387141155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Kaladp0192s0035.1.p  87 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 141
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-3284142IPR009057Homeodomain-like
PROSITE profilePS5129412.80184144IPR017930Myb domain
SuperFamilySSF466892.33E-1686142IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2387142IPR006447Myb domain, plants
PfamPF002493.5E-889139IPR001005SANT/Myb domain
PfamPF143794.6E-21180219IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MHTAFPPFPD SLPSSKTEPY SPPLYESHLF IFARRETKQQ AARNSAYSKK KKKMFHSKKP  60
SSMNNSPHER AMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVAQLGGP DKATPKTIMR  120
VMGVKGLTLY HLKSHLQKFR LGKQPHKEFN EHSLKDVSAL ELQRSNTSSS GMMGRNMNEM  180
QLEVQRRLHE QLEVQRHLQL RIEAQGKYMQ AILEKACQTL AGENNHNMAS GSSSYNNMKA  240
GIGNNQGVGG QHHQDLDAIK DFASLGFPSL LDLSIYGQAA AGGDQIDLHQ SNFDSNDTDN  300
SRPPSMDVFI HDPNTNDDAI CLGNPKKRPS PYISSSGNGK GPLLWSDDLR LQDLGTTTTH  360
SCHDIQIGPP PSTSPAMEET LFETKPMSLN GDPMMGEKAI KLERPSPRRV PHVSSVDRMM  420
NPVMSMSQGR SSSPFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1887143157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1887143157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1887143157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1887143157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1887143258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14858KKKKKMFHSKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024198168.11e-148myb family transcription factor APL isoform X1
SwissprotQ9SAK51e-118APL_ARATH; Myb family transcription factor APL
TrEMBLA0A1R3I5R91e-148A0A1R3I5R9_9ROSI; Uncharacterized protein
STRINGXP_008226001.11e-147(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-111G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]