PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0192s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 473aa MW: 52051.1 Da PI: 6.8878 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.4 | 4.4e-30 | 246 | 300 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW pe+He+Fveav++L G+ekAtPk +l+lm++k Lt++hvkSHLQkYRl Kaladp0192s0019.1.p 246 KPRMRWLPEIHECFVEAVNKLDGPEKATPKGVLKLMNMKNLTIYHVKSHLQKYRL 300 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.58E-15 | 244 | 300 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 245 | 301 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-22 | 246 | 301 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-5 | 248 | 299 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.9E-21 | 336 | 383 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MSKKQSQPPK RVTLPVCSSP PHPKCAATEL QNVALFSTCS TFLSSPQTDH VEAHNLISKS 60 AIVPFKSYAH QSKTTHCPSS LFCTNLYQSS SSTSEAHRQL GNPPFLPNPP PSTHPLSHFH 120 SQTSPLHFSG ASRSCSYHEQ QANDDLMGDF TYMHGDSFDG SFPGLSSGNN DIGISDQLDL 180 HFLSDELDIA MTHSGDNPGI DELYEVPKES LKSSVELTCN SNCNSSALVG DATSGEMSPG 240 LCTAHKPRMR WLPEIHECFV EAVNKLDGPE KATPKGVLKL MNMKNLTIYH VKSHLQKYRL 300 AKYMQERKED KNLSSNEAKK ATSSCNESDG RRKGSIQVTE ALRMQMEVQK QLHEQLEVQR 360 ALQLRIEEHA RHLQKILEEQ QKAGNHFISL HSLSSLTSSS TCTNNALEPT KPTSPVLSSH 420 DEATVSKTEL SLASGHKEIN SNDSEEPGRK RPRLETKFEN TPCDGVPSGQ NP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-24 | 246 | 303 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021819954.1 | 1e-137 | myb family transcription factor PHL6 | ||||
Refseq | XP_021819955.1 | 1e-137 | myb family transcription factor PHL6 | ||||
Refseq | XP_021819956.1 | 1e-137 | myb family transcription factor PHL6 | ||||
TrEMBL | A0A498HDN5 | 1e-132 | A0A498HDN5_MALDO; Uncharacterized protein | ||||
STRING | XP_008228026.1 | 1e-131 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 6e-92 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0192s0019.1.p |