PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0296.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 374aa    MW: 41909.8 Da    PI: 6.3718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0296.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.72.2e-40141271128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Kaladp0101s0296.1.p  14 MLPGFRFHPTDEELVAFYLKRKIQQRPLAI-ELIKQLDIYKHDPWDLPKLAATGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 102
                          579************************999.89***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s++g              +a kg ktdW+mhe+rl
  Kaladp0101s0296.1.p 103 PIYSSEG-------------TKAAKGIKTDWMMHEFRL 127
                          ****443.............36889***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-4814161IPR003441NAC domain
PROSITE profilePS5100541.9414161IPR003441NAC domain
PfamPF023651.9E-1916127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDEGNDDDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP  60
KLAATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KAAKGIKTDW  120
MMHEFRLPAS LADYSGPPKR FTDKANNPVN DAWAICRIFK KTNTTAQRAV SHCWISPTSP  180
DNLKPTKCGG QSSQLTSAEP NIISMTPKPT SPNFPFSYDT LSHQQQHSCA TSFSHPDLSY  240
NKSITPTSHI PNNLIFPPHD NSSISSSMAL FNVSPSPMTF QEFSKAAASD GSELTEFPST  300
LLQALLHEEE HHLPELRENA SCGANSDDTW NLLNPGFGFS VSDPASELAW RSNLVWDSSP  360
CPSEMSTNYK CYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-431616819171NO APICAL MERISTEM PROTEIN
1ut4_B1e-431616819171NO APICAL MERISTEM PROTEIN
1ut7_A1e-431616819171NO APICAL MERISTEM PROTEIN
1ut7_B1e-431616819171NO APICAL MERISTEM PROTEIN
3swm_A1e-431616822174NAC domain-containing protein 19
3swm_B1e-431616822174NAC domain-containing protein 19
3swm_C1e-431616822174NAC domain-containing protein 19
3swm_D1e-431616822174NAC domain-containing protein 19
3swp_A1e-431616822174NAC domain-containing protein 19
3swp_B1e-431616822174NAC domain-containing protein 19
3swp_C1e-431616822174NAC domain-containing protein 19
3swp_D1e-431616822174NAC domain-containing protein 19
4dul_A1e-431616819171NAC domain-containing protein 19
4dul_B1e-431616819171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895075.11e-122protein FEZ
TrEMBLB9S8V81e-114B9S8V8_RICCO; NAC domain-containing protein, putative
STRINGXP_002522427.11e-115(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.13e-89NAC family protein