PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0101s0204.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 469aa MW: 50691.4 Da PI: 4.8767 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.7 | 1.4e-06 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft++++ e+e+ + n+ p +e LA+k ++ +qV +WFqN+R+ +k Kaladp0101s0204.1.p 13 RFTPSEVAEMEAILSEhnNKLPPRELFVTLADKFsngperigkiTVQMKQVWNWFQNKRYAMK 75 589999999999998655888999999999999999999999889999***********9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-10 | 4 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.006 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.329 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.94E-4 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 13 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 9.0E-36 | 123 | 250 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MGRPPGNGGP AFRFTPSEVA EMEAILSEHN NKLPPRELFV TLADKFSNGP ERIGKITVQM 60 KQVWNWFQNK RYAMKAKSNK SQAAKLDVAP LQAVPPLAPA ALAPALQSVP PVRQEVNGKA 120 PNNMEFEARS ARDGAWYDVA AFLSVRNKDT DDPEVLVRFV GLTPEEDEWI KVSKHVRHRS 180 LPCEASECVA VLPGDLILCF QEAPEQALYF DAHVLDAQRM KHDSRGCRCS FMVRYDHDQF 240 EEVVPLRKIC RRPETDYRLQ IYQALPDLPA QQKKIVQSSA CSAPLEDNPV AESVQMPAQK 300 VDDNTAPASS APSSPVAREK NTAGSLEEGN PGHVTADNAS KLTRKAEESV DQDAETKRPR 360 PSDHTENPVG QDASTPAVMP ESDKQDETQG VADSAVEQKG SSPRQQDPAG PCAVVKEKEA 420 VSNDVAEVDD GDPNPGGGAL TCQNQTNGHT GGSGGGSSDV AVGVQQCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-42 | 123 | 254 | 3 | 134 | SHH1 SAWADEE |
4iur_B | 2e-42 | 123 | 254 | 3 | 134 | SHH1 SAWADEE |
4iut_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-42 | 123 | 254 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 356 | 360 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899221.1 | 1e-128 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-115 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2P5AR39 | 1e-127 | A0A2P5AR39_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_008386219.1 | 1e-126 | (Malus domestica) | ||||
STRING | XP_004511250.1 | 1e-126 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-112 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0101s0204.1.p |