PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0149.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 648aa    MW: 70571 Da    PI: 5.0258
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0149.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77e-30204257155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +pr++WtpeLH++Fv+av+qL G++kA+Pk+il++m+v+gLt+e+v+SHLQkYR+
  Kaladp0101s0149.2.p 204 RPRVVWTPELHRKFVSAVNQL-GIDKAVPKKILDVMDVEGLTRENVASHLQKYRM 257
                          59*******************.********************************8 PP
2Response_reg79.79.5e-27191271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+++ +  ++++l++ +y +v+++  ++eale+l+e++  +D++++D++mp++dG++ll++i  e  +lp+i+++ ++ + ++ +
  Kaladp0101s0149.2.p  19 VLCVDDDQTCLFWMENLLKSCQY-NVTTTLYAREALEMLRENKriYDIVITDVQMPDIDGFQLLETIGLEM-DLPVIMMSIYDHQGYVSR 106
                          89*********************.***************99999***********************6654.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+  ee+ +
  Kaladp0101s0149.2.p 107 GVHHGAVDYLLKPVRLEEIQN 127
                          *****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.8E-1391646IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.6E-3916140No hitNo description
SuperFamilySSF521724.27E-3316140IPR011006CheY-like superfamily
SMARTSM004481.8E-2717129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.518133IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.5E-2419127IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.97E-2620133No hitNo description
Gene3DG3DSA:1.10.10.602.5E-31201262IPR009057Homeodomain-like
PROSITE profilePS5129412.609201260IPR017930Myb domain
SuperFamilySSF466891.34E-20202261IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25205257IPR006447Myb domain, plants
PfamPF002491.7E-7206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MGPEQEKEID DQFPVGIRVL CVDDDQTCLF WMENLLKSCQ YNVTTTLYAR EALEMLRENK  60
RIYDIVITDV QMPDIDGFQL LETIGLEMDL PVIMMSIYDH QGYVSRGVHH GAVDYLLKPV  120
RLEEIQNIWQ HVLRKRKGLD KGKKVVTQDK SSPGAGNGAV ANSIASAGDT SDKRGRDPSD  180
KDDEDYEEED DSGRENEEQT SQKRPRVVWT PELHRKFVSA VNQLGIDKAV PKKILDVMDV  240
EGLTRENVAS HLQKYRMYLK RISNGNPQQG MFGALGGRHA LDAMGYRGGR LHNSLLSGYP  300
PSLSGILSGR VNSSNGVNFR SISSSDLIQS GQNLRNSINP LAKPNVMPSL QNGSLFQGMR  360
GGFEQDPTQA SKAMTQLADF NPGLGATGLR VSENLMDPKV VLNGSSSRKM LPAPSQFSQT  420
GASPVPGALR IGGMPGAPSN NAGMMNHSGT SDSWKSAAQF PQSSFQMGGS GSENGTFTQD  480
QHLPINNNAM NGIASTGIQP QLLGFPQMLA PLRNSNIGMQ GELGMHNAEH IKQQEYTQEL  540
NNLFGSLNPI MTSGGSIMGS MGTDQNHLVA NGGNFVGQQT GILGPDPNFK PSNDSFVPEQ  600
ANLSQDDFIP NNVESLDEIM NTMIRRDNNG ASSLFMDGDF NFDVEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25200263164ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-88response regulator 12