PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0149.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 659aa    MW: 71871.5 Da    PI: 5.1914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77.2e-30215268155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +pr++WtpeLH++Fv+av+qL G++kA+Pk+il++m+v+gLt+e+v+SHLQkYR+
  Kaladp0101s0149.1.p 215 RPRVVWTPELHRKFVSAVNQL-GIDKAVPKKILDVMDVEGLTRENVASHLQKYRM 268
                          59*******************.********************************8 PP
2Response_reg79.79.8e-27301381109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+++ +  ++++l++ +y +v+++  ++eale+l+e++  +D++++D++mp++dG++ll++i  e  +lp+i+++ ++ + ++ +
  Kaladp0101s0149.1.p  30 VLCVDDDQTCLFWMENLLKSCQY-NVTTTLYAREALEMLRENKriYDIVITDVQMPDIDGFQLLETIGLEM-DLPVIMMSIYDHQGYVSR 117
                          89*********************.***************99999***********************6654.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+  ee+ +
  Kaladp0101s0149.1.p 118 GVHHGAVDYLLKPVRLEEIQN 138
                          *****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.8E-1393657IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.8E-3927151No hitNo description
SuperFamilySSF521724.41E-3327151IPR011006CheY-like superfamily
SMARTSM004481.8E-2728140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.529144IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-2430138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.04E-2531144No hitNo description
Gene3DG3DSA:1.10.10.602.5E-31212273IPR009057Homeodomain-like
PROSITE profilePS5129412.609212271IPR017930Myb domain
SuperFamilySSF466891.34E-20213272IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-25216268IPR006447Myb domain, plants
PfamPF002491.8E-7217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MNKDDRKNKA VMGPEQEKEI DDQFPVGIRV LCVDDDQTCL FWMENLLKSC QYNVTTTLYA  60
REALEMLREN KRIYDIVITD VQMPDIDGFQ LLETIGLEMD LPVIMMSIYD HQGYVSRGVH  120
HGAVDYLLKP VRLEEIQNIW QHVLRKRKGL DKGKKVVTQD KSSPGAGNGA VANSIASAGD  180
TSDKRGRDPS DKDDEDYEEE DDSGRENEEQ TSQKRPRVVW TPELHRKFVS AVNQLGIDKA  240
VPKKILDVMD VEGLTRENVA SHLQKYRMYL KRISNGNPQQ GMFGALGGRH ALDAMGYRGG  300
RLHNSLLSGY PPSLSGILSG RVNSSNGVNF RSISSSDLIQ SGQNLRNSIN PLAKPNVMPS  360
LQNGSLFQGM RGGFEQDPTQ ASKAMTQLAD FNPGLGATGL RVSENLMDPK VVLNGSSSRK  420
MLPAPSQFSQ TGASPVPGAL RIGGMPGAPS NNAGMMNHSG TSDSWKSAAQ FPQSSFQMGG  480
SGSENGTFTQ DQHLPINNNA MNGIASTGIQ PQLLGFPQML APLRNSNIGM QGELGMHNAE  540
HIKQQEYTQE LNNLFGSLNP IMTSGGSIMG SMGTDQNHLV ANGGNFVGQQ TGILGPDPNF  600
KPSNDSFVPE QANLSQDDFI PNNVESLDEI MNTMIRRDNN GASSLFMDGD FNFDVEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25211274164ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-88response regulator 12