PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0101s0132.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 363aa MW: 40817.1 Da PI: 6.0039

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0101s0132.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.9	4e-12	75	107	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 + +k++rr+++NReAAr+sR+RKka++++Le+ Kaladp0101s0132.3.p 75 PTDKVQRRLAQNREAARKSRLRKKAYVQQLETS 107 579***************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.6E-9	74	123	No hit	No description
SMART	SM00338	1.1E-7	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.4E-9	76	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.29E-7	78	123	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.6E-30	165	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MQSPSSHFLP MTGMGMYDPV RHTGIWPESF EGNGFVNTSP STILEVNTKL DNQSEDTSNG 60 SFGYAYNYGE ETTKPTDKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LMQLEQELHQ 120 TRQQGVNTGG DFGASHLGIS GAVTSGITAF EMEYGRWVEK NNKQLIELRS ALDSRQSEAE 180 LSTLVDNVMK HYFELFQLKQ TAAKADVFYL MSGMWKTIAE RFFLWVGGFR PSELLKVLVP 240 QLDPLAENQL LEICNLRRSC QQAEDALSQG LDKLQEIVVD TLAAGQMDDG SCIPQIAATM 300 DKLRDLVSFV NQADHLRRET LNQMSQILTT YQAAQGLLAL GDYLERLRAL SSFWATRPRE 360 AA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MQSPSSHFLP MTGMGMYDPV RHTGIWPESF EGNGFVNTSP STILEVNTKL DNQSEDTSNG  60
SFGYAYNYGE ETTKPTDKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LMQLEQELHQ  120
TRQQGVNTGG DFGASHLGIS GAVTSGITAF EMEYGRWVEK NNKQLIELRS ALDSRQSEAE  180
LSTLVDNVMK HYFELFQLKQ TAAKADVFYL MSGMWKTIAE RFFLWVGGFR PSELLKVLVP  240
QLDPLAENQL LEICNLRRSC QQAEDALSQG LDKLQEIVVD TLAAGQMDDG SCIPQIAATM  300
DKLRDLVSFV NQADHLRRET LNQMSQILTT YQAAQGLLAL GDYLERLRAL SSFWATRPRE  360
AA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048077.1	1e-180	PREDICTED: transcription factor TGA1
Refseq	XP_017983090.1	1e-180	PREDICTED: transcription factor TGA1
Swissprot	Q39237	1e-161	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A061DI74	1e-179	A0A061DI74_THECC; BZIP transcription factor family protein isoform 1
STRING	EOX92234	1e-180	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-163	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0101s0132.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]