PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0101s0126.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 363aa MW: 41943.5 Da PI: 6.5096

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0101s0126.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.2e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+k+v++ +++l +vik+vd+y++ePwdL++ ++ ++++ ++yfFs++dkky+tg+r+nratk+g+Wkatg Kaladp0101s0126.1.p 8 VPPGFRFHPTDEELVDYYLRKRVASMQIDL-DVIKDVDLYRIEPWDLQElcNIGSDDQsDYYFFSHKDKKYPTGTRTNRATKAGFWKATG 96 69**************************.9***********95445555444488************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk++++ k++ vg++ktLvfykgrap+g+k dW+mheyrle Kaladp0101s0126.1.p 97 RDKAIYA-KHSMVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 137 ***.8889**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-58	6	157	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	8	157	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNSFSNVVPP GFRFHPTDEE LVDYYLRKRV ASMQIDLDVI KDVDLYRIEP WDLQELCNIG 60 SDDQSDYYFF SHKDKKYPTG TRTNRATKAG FWKATGRDKA IYAKHSMVGM RKTLVFYKGR 120 APNGQKLDWI MHEYRLETNE NAAHQEEGWV VCRVFKKRMM TTSMRKDGDH HHESPYWYDE 180 QASFMGDMDS PMRMLSSHPY PSHNHLYHPP SYSCKQEQQL DLHNYTLSQD SFLNLPQLES 240 PKIPTPASAN ITSYGFGDQG VQHSYQNNVM YGDNSNSFAN EHHQAVDQVS TDWRVLDKFV 300 ASQLSHENGV EKHYYLNNGS TFEMDQDDMS GLIDNNGSKR VKMRTEFASS STSSGQVDQW 360 KS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNSFSNVVPP GFRFHPTDEE LVDYYLRKRV ASMQIDLDVI KDVDLYRIEP WDLQELCNIG  60
SDDQSDYYFF SHKDKKYPTG TRTNRATKAG FWKATGRDKA IYAKHSMVGM RKTLVFYKGR  120
APNGQKLDWI MHEYRLETNE NAAHQEEGWV VCRVFKKRMM TTSMRKDGDH HHESPYWYDE  180
QASFMGDMDS PMRMLSSHPY PSHNHLYHPP SYSCKQEQQL DLHNYTLSQD SFLNLPQLES  240
PKIPTPASAN ITSYGFGDQG VQHSYQNNVM YGDNSNSFAN EHHQAVDQVS TDWRVLDKFV  300
ASQLSHENGV EKHYYLNNGS TFEMDQDDMS GLIDNNGSKR VKMRTEFASS STSSGQVDQW  360
KS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-47	8	158	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010662230.1	1e-153	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-127	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	F6HP90	1e-150	F6HP90_VITVI; Uncharacterized protein
STRING	VIT_02s0154g00020.t01	1e-151	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-129	NAC 007

Link Out ? help Back to Top
Phytozome	Kaladp0101s0126.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]