PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0100s0096.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 315aa MW: 35654.8 Da PI: 7.261

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0100s0096.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.8	8e-32	85	189	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae+h +g +++ l++ede g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ Kaladp0100s0096.1.p 85 FEKPLTPSDVGKLNRLVIPKQHAERHfplntsNGADSGGMLLSFEDEAGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFER 174 99*************************9995566799**********************************************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + ++ +l+++++r+ Kaladp0100s0096.1.p 175 HPTDPDRLFIGWRRR 189 87788889**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-39	77	197	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.25E-28	84	178	No hit	No description
SuperFamily	SSF101936	4.97E-30	84	191	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.184	85	190	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-29	85	189	IPR003340	B3 DNA binding domain
SMART	SM01019	4.3E-23	85	190	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSVNQISPEF LWWSPHHPQQ QQPLVTNSPN SAHNPKSLVF AHHFQNFNLN NPNDNEDDDD 60 RRAEQMNSNN NNNGGSQQQQ LEVMFEKPLT PSDVGKLNRL VIPKQHAERH FPLNTSNGAD 120 SGGMLLSFED EAGKFWRFRY SYWNSSQSYV LTKGWSRYVK EKRLDAGDVV LFERHPTDPD 180 RLFIGWRRRH DPAHQSNSAA AVSGRGLSYP AHHHHHQSYP AHQYRPDPEV SAGGNLVKTG 240 SFNGSSSSRT LRLFGVNMEY QCESDQSEPA TPDGSSASSP SRQAVYQHYY THFYPQASYG 300 MTSHIDASHS QHRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-47	84	189	7	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-47	84	189	7	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600245.1	3e-76	PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
Refseq	XP_009600246.1	2e-76	PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
Swissprot	Q8GYJ2	1e-68	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1S3Y9D4	4e-74	A0A1S3Y9D4_TOBAC; B3 domain-containing protein At2g36080-like
STRING	XP_009600245.1	1e-75	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0100s0096.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]