PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0100s0079.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24599.4 Da PI: 5.151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.7 | 3e-36 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+apyf ++ + +f +vhk+FGasnv+kll ++p ++r++a+ ++ yeA r+ dPv G+v++i +l+qq+++ Kaladp0100s0079.1.p 9 SCGACKFLRRKCTSECVFAPYFSYDEaATHFGAVHKVFGASNVSKLLMHIPVQHRTEAALTISYEAFSRMTDPVFGCVAHIYALHQQIAN 98 6**********************988689************************************************************* PP DUF260 90 lkaelallkee 100 l++e++l++++ Kaladp0100s0079.1.p 99 LQEEIELVGSQ 109 ******99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.593 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-34 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPGQGSSSSC GACKFLRRKC TSECVFAPYF SYDEAATHFG AVHKVFGASN VSKLLMHIPV 60 QHRTEAALTI SYEAFSRMTD PVFGCVAHIY ALHQQIANLQ EEIELVGSQM AAGFPFTFPV 120 SQPTADKVSM NPAAFNLQQQ MDHHQQAQYI TNAGYGNSAA DQSYIYQCQQ LPFVWGSGEA 180 HSGNIDNYLN GEINEGLDHE PLLCSPLLNN NDNVTEIPNT AASGW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 5 | 120 | 7 | 128 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 5 | 120 | 7 | 128 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091407.1 | 1e-60 | LOB domain-containing protein 33 | ||||
TrEMBL | A0A067LJS2 | 2e-59 | A0A067LJS2_JATCU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-55 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0100s0079.1.p |