PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0099s0038.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 109aa MW: 12137 Da PI: 4.2156 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 17 | 65 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT eEd+++ +a +++ +W+ + r mg+ +t +++++++q + Kaladp0099s0038.1.p 17 TWTREEDKRFEEALALYIDQdpstRWDNVVRQMGESKTVEEVIHHYQLL 65 7****************988**************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.202 | 10 | 66 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.1E-6 | 14 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-8 | 16 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-7 | 17 | 66 | No hit | No description |
SuperFamily | SSF46689 | 3.12E-9 | 18 | 73 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MSSSNNSNSA TPSRTTTWTR EEDKRFEEAL ALYIDQDPST RWDNVVRQMG ESKTVEEVIH 60 HYQLLVDDVN NIEAGRISLP DYVDDDTDEA LSTSSPPSNS NDKCRGGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-15 | 18 | 82 | 11 | 73 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423283.1 | 2e-21 | protein RADIALIS-like 3 | ||||
Refseq | XP_006469147.1 | 2e-21 | protein RADIALIS-like 3 | ||||
TrEMBL | A0A067E8G3 | 4e-20 | A0A067E8G3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PY89 | 4e-20 | A0A2H5PY89_CITUN; Uncharacterized protein | ||||
TrEMBL | V4RQ20 | 4e-20 | V4RQ20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469147.1 | 6e-21 | (Citrus sinensis) | ||||
STRING | XP_006423283.1 | 6e-21 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-19 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0099s0038.1.p |