PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0098s0063.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 382aa MW: 41922.1 Da PI: 9.8811 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69.9 | 3.1e-22 | 152 | 193 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 d+epgrCrRtDGKkWRCsr+v +g+k+C+rH++rgr+++++ Kaladp0098s0063.1.p 152 DPEPGRCRRTDGKKWRCSRDVAPGHKYCDRHMNRGRMNRSRN 193 79*********************************9877654 PP | |||||||
2 | QLQ | 49.9 | 9.8e-18 | 78 | 112 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i++ Kaladp0098s0063.1.p 78 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIKN 112 9********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-10 | 76 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.606 | 77 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-12 | 78 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.45 | 152 | 198 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.6E-18 | 153 | 192 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDFKLMQWRD QQQQREHQSN HQAVGKDRKQ DQQQEQQSLS ALSLFLTEPV SKVGIMSGLL 60 DTPSASKFPK MMMMGGQFSS AQWQELELQA VIFRYMLAGA SVPAELLQPI KNSLLNSSSF 120 FLHHPLQHYS NYQPAATVAL LQSGYWGRAG MDPEPGRCRR TDGKKWRCSR DVAPGHKYCD 180 RHMNRGRMNR SRNRSRKPVE LPKPRTNMTP TNYVNAGGGE LGNSVYPMKA PPLGVPSRAH 240 FGSIGGAAAA APSIDSLHLG RRSPFELDRT ESPHSGTSDC RVLRRFFDDW PRPMAESGAG 300 GTHIDLMGSS ASLSMSTQEN SASDVSLKLS TGSGSEEASA ERDRTQLNWM AQWGQHQAGP 360 MGGPLAEALR SSATPAAELA R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277233.3 | 1e-112 | PREDICTED: growth-regulating factor 3 | ||||
TrEMBL | A0A2I4DTW3 | 1e-111 | A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1 | ||||
TrEMBL | F6HKI6 | 1e-110 | F6HKI6_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g03760.t01 | 1e-111 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 6e-54 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0098s0063.1.p |