PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0096s0157.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 27069.3 Da PI: 8.8355 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.3 | 3.5e-40 | 40 | 141 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkCa++Cv+apyf ++q +++fa+vhk+FGasnv+kll+++p ++r+d++ +++yeA+ar++dPvyG+v++il+lqqq++ Kaladp0096s0157.1.p 40 PCGACKFLRRKCAAGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLQHIPVNRRQDTVVTVTYEAQARLSDPVYGCVSTILALQQQVAA 129 7***********************9989************************************************************** PP DUF260 90 lkaelallkeel 101 l++el++++++l Kaladp0096s0157.1.p 130 LQTELSMVQSQL 141 *******99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.339 | 39 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-39 | 40 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MADPPGGRGR ETMSHRKGQS KRPDDEATGR IPAATPTTPP CGACKFLRRK CAAGCVFAPY 60 FGSDQGAARF AAVHKVFGAS NVSKLLQHIP VNRRQDTVVT VTYEAQARLS DPVYGCVSTI 120 LALQQQVAAL QTELSMVQSQ LINRKLAATN SLQTSQQQQL LGPQQQMSSM SSVMMQPAYS 180 NNSSSSNNNN DNNTLMNHLA SFNSNFGAAT CFQPLRLSRH QLQNEDDDEE KSPDAIIFTN 240 DIFHRRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-39 | 34 | 155 | 1 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-39 | 34 | 155 | 1 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271115.1 | 7e-80 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-68 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A1Q3D8G0 | 5e-80 | A0A1Q3D8G0_CEPFO; DUF260 domain-containing protein (Fragment) | ||||
STRING | VIT_08s0056g01650.t01 | 3e-79 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-53 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0096s0157.1.p |