PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0054.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 287aa    MW: 30470.1 Da    PI: 10.7599
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-1796142349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                           + +s r vtfskR+ g++ KA+EL +LC+++ a+iifs+ gk + +
  Kaladp0096s0054.1.p  96 LDKQSSRLVTFSKRKSGLFAKASELATLCAVQCAMIIFSPGGKAFSF 142
                          578999************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.4686146IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-2186145IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-2287156IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-1488108IPR002100Transcription factor, MADS-box
PfamPF003194.7E-1997142IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-14108123IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-14123144IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MIEEHNLFLR SVWKLMSLEG MIEDTLFLRV MAMVSNTGSI NIGITTANAS LGVEISKSAD  60
VAALPTDSLT TDVLHGGASG GPKRTKGRLK LPLKKLDKQS SRLVTFSKRK SGLFAKASEL  120
ATLCAVQCAM IIFSPGGKAF SFGHPSTDEV VKRYMWGKNA PPIPSNNPLT QNLLEAHRRA  180
NLKALNAQLS EVSLACEAEK KKGKMPGRSK LSRASWNELL GKMNSSELEN VKMRINSLKA  240
HVNNLSGQHA TAGGPRPTGQ VSHPGFGHNL GAGSSSGSFF GGGFGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31AGAMOUS-like 62