PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0095s0807.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1118aa MW: 120764 Da PI: 8.0999 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.7 | 4.4e-07 | 379 | 396 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C ++CH+GpCp+C Kaladp0095s0807.1.p 379 CGNHFCTEICHPGPCPEC 396 ****************** PP | |||||||
2 | zf-NF-X1 | 21.9 | 3.8e-07 | 533 | 551 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CGkH+C++lCH G C pC Kaladp0095s0807.1.p 533 CGKHSCEALCHSGYCAPCL 551 ******************6 PP | |||||||
3 | zf-NF-X1 | 16.9 | 1.4e-05 | 643 | 658 | 1 | 16 |
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG+H C ++CH+ C+ Kaladp0095s0807.1.p 643 CGMHACTRTCHPSSCD 658 ***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.91E-6 | 138 | 207 | No hit | No description |
PROSITE profile | PS50016 | 8.911 | 145 | 206 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.568 | 148 | 204 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 148 | 203 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 2.84E-4 | 237 | 298 | No hit | No description |
SMART | SM00438 | 0.023 | 260 | 278 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 262 | 277 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.79E-10 | 305 | 353 | No hit | No description |
SMART | SM00438 | 0.018 | 315 | 334 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0016 | 317 | 332 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.00E-9 | 369 | 411 | No hit | No description |
Pfam | PF01422 | 4.8E-5 | 379 | 396 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.6E-5 | 379 | 398 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.53E-13 | 427 | 475 | No hit | No description |
Pfam | PF01422 | 0.0012 | 437 | 454 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.028 | 437 | 456 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 495 | 506 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 120 | 495 | 525 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.46E-8 | 523 | 566 | No hit | No description |
Pfam | PF01422 | 2.1E-5 | 533 | 550 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.3E-4 | 533 | 552 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.81E-5 | 580 | 628 | No hit | No description |
Pfam | PF01422 | 7.4 | 590 | 607 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.092 | 590 | 608 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0014 | 643 | 658 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.039 | 643 | 673 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.06E-5 | 671 | 720 | No hit | No description |
Pfam | PF01422 | 89 | 675 | 701 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.11 | 682 | 703 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.6E-4 | 815 | 879 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 4.7E-5 | 927 | 985 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1118 aa Download sequence Send to blast |
MSSQVRNDRK RYPTQSSRHQ QWIPVGSVTN TVVNTTQLSA APVIANPPQA SAPPVVLDNT 60 STSGSSSGIN VGDPSYSSTQ LSDNRSRGQF ATRGSKGRPF NQRRDKGRGR ERETGDGART 120 ETEEVKDASL PQLVQELQEK LAKGSVECMI CYDMVRRSAP IWSCSSCYSI FHLNCIRKWA 180 RAPTSVDLIA EKNQGVNWRC PGCQSVQLST PKEIRYECFC RKRVDPPSDL YLTPHSCGES 240 CGKPLEKEAP VAGNSKDYLC PHVCVLQCHP GPCPPCKAFA PPCSCPCGKK IITTRCSDRK 300 SVLTCGQRCN KLLDCWRHRC EKVCHVGSCD PCDSMIAASC FCKKKVEVLR CGEMSVKGVV 360 KEEDGVFSCT DACGKKLGCG NHFCTEICHP GPCPECDLVP SRIKTCCCGK TNLVERRESC 420 MDPVPICEKV CEKQLPCGVH LCKEKCHTGN CSPCMTLVTQ KCRCGSTSRT VECHKTINAE 480 EIFTCDKPCG RKKNCGRHRC SERCCPLSSS SSTHIVDWDP HFCSMICGKK LRCGKHSCEA 540 LCHSGYCAPC LETIFTDLTC ACGRTSLPPP LPCGTPPPSC QLPCSVPQPC GHPSSHSCHF 600 GDCPPCSVPV SKECVGSHVI LRNIPCGSKD IRCNKLCGKT RRCGMHACTR TCHPSSCDAP 660 SESNTSSKAS CGQTCGAPRR DCRHTCTAPC HPLASCPDVR CSFPVTITCS CGRITANVPC 720 DAGGSTSGFT GDSLYEASIL QKLPAPLQPV ESNGRKIPLG QRKLTCDDEC AKLERKRVLA 780 DAFDITPPNL DGLHLGENAT LSELLSDLFR RDAKWVMSVE ERCKFLVLGK SRGVASNIKV 840 HVFCPMPKEK RDAMRVIAER WKLAINTAGW EPKRFVVVHV TSRSKAPART LGLKGSVSSS 900 IVHPPVFDPS IDMDPRLVVS LLDLPRDADI SALVLRFGGE CELVWLNDKN ALAVFHDPAR 960 AATAMRRLDH GSVYHGAVTI QSVSASAASP GANPWGGGSK LNPWKDALEE PGWGEGSWGG 1020 ADGSSIKASV VKSAWQKNNG DPITASVNRW SVLGSEVGQS SSVASVDVVD NRKQSASVST 1080 SAMEPQPNLS MPAGQHGGEP SGADATEVVD DWEKAYE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081933.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | F6GSQ1 | 0.0 | F6GSQ1_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g01920.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0095s0807.1.p |