PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0095s0321.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 348aa MW: 38469.1 Da PI: 7.879

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0095s0321.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.1	1.7e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Kaladp0095s0321.1.p 15 LPPGFRFHPTDEELVVHYLKKKIASLPLPV-SIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 103 79**************************.89***********8888999******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Kaladp0095s0321.1.p 104 PILTSnGTHKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 99867788***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	8	181	IPR003441	NAC domain
PROSITE profile	PS51005	61.619	15	181	IPR003441	NAC domain
Pfam	PF02365	3.7E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MESTDSSTCS QHPQLPPGFR FHPTDEELVV HYLKKKIASL PLPVSIIAEI DLYKFDPWEL 60 PGKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG THKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDGSVSSN AFKPPVADAS STNKKASLRL DDWVLCRIYK 180 KSNGSRPMDT DPGHDKDDSS MDEMLISSSS RQNYTGLLEP PDESHFFDGI LPHQHPAMAQ 240 QPASMLTHLN PKQPTLSMVL PAQEHKRPHP NLVHEFWMGA ASEFKKMNSE GEERETGAGS 300 GSGSFVSLLS PHAGGGGYHQ NFMLGSISGG DGYSRPGYHQ QLNWNNS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MESTDSSTCS QHPQLPPGFR FHPTDEELVV HYLKKKIASL PLPVSIIAEI DLYKFDPWEL  60
PGKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG THKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDGSVSSN AFKPPVADAS STNKKASLRL DDWVLCRIYK  180
KSNGSRPMDT DPGHDKDDSS MDEMLISSSS RQNYTGLLEP PDESHFFDGI LPHQHPAMAQ  240
QPASMLTHLN PKQPTLSMVL PAQEHKRPHP NLVHEFWMGA ASEFKKMNSE GEERETGAGS  300
GSGSFVSLLS PHAGGGGYHQ NFMLGSISGG DGYSRPGYHQ QLNWNNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-72	15	186	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-72	15	186	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-72	15	186	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-72	15	186	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-72	15	186	20	173	NAC domain-containing protein 19
3swm_B	2e-72	15	186	20	173	NAC domain-containing protein 19
3swm_C	2e-72	15	186	20	173	NAC domain-containing protein 19
3swm_D	2e-72	15	186	20	173	NAC domain-containing protein 19
3swp_A	2e-72	15	186	20	173	NAC domain-containing protein 19
3swp_B	2e-72	15	186	20	173	NAC domain-containing protein 19
3swp_C	2e-72	15	186	20	173	NAC domain-containing protein 19
3swp_D	2e-72	15	186	20	173	NAC domain-containing protein 19
4dul_A	2e-72	15	186	17	170	NAC domain-containing protein 19
4dul_B	2e-72	15	186	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293567.1	1e-130	PREDICTED: NAC transcription factor 25
Swissprot	A0SPJ6	1e-101	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	Q8GY42	1e-101	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A286LLT3	1e-127	A0A286LLT3_ROSCH; NAC family protein
STRING	XP_004293567.1	1e-130	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-102	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Kaladp0095s0321.1.p

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]