PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0245.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 298aa    MW: 33432.8 Da    PI: 8.2678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001527123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C++ F +  ++  H+r+H
  Kaladp0095s0245.1.p  5 HSCKICNRKFANGKSMGGHMRSH 27
                         79*******************99 PP
2zf-C2H214.40.00011197218223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ C+k+F++   L  H+r+H
  Kaladp0095s0245.1.p 197 RCQMCKKVFKNYQALGGHMRNH 218
                          6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.14E-5432No hitNo description
PfamPF139127.2E-6527IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658532IPR007087Zinc finger, C2H2
SMARTSM003550.023527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058196218IPR007087Zinc finger, C2H2
SMARTSM003550.038196218IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-10197220IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-7197257No hitNo description
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
PfamPF139125.0E-10234257IPR007087Zinc finger, C2H2
SMARTSM003550.2235257IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702235257IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELKHSCKIC NRKFANGKSM GGHMRSHFAK LPILSSSSAS RQPESLNARA PVTCLSSSYD  60
PLSQKLDYGC GGYQAKNATS ANRISAMAAL RVRASSRKRS KRIPRFIKKE SKPISAPPLD  120
PRYGEFTSPE TLVFVEDAAR CLMKLSKDKW PENDERLHGN HFPYFVETHS EDDTLSDEEE  180
DEEGDLSEPV EEIFGRRCQM CKKVFKNYQA LGGHMRNHRR PPVARPVPVV EKRVFQCEIC  240
LKVFGSGQAL GGHKKVHLFM DKKNVIENDL PIFENDPDSD CEFRSESTSA SETSSDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-19C2H2-like zinc finger protein