PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0107.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 241aa    MW: 27324.3 Da    PI: 7.021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.69.1e-27118176159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+vk++++ r+YY+Ct +gC+vkk ver  ed ++v++ Y g H+he
  Kaladp0095s0107.1.p 118 LDDGYRWRKYGKKHVKNNPNLRNYYKCTAEGCQVKKIVERWVEDSSYVITQYVGVHTHE 176
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-29104178IPR003657WRKY domain
SuperFamilySSF1182905.49E-26111178IPR003657WRKY domain
PROSITE profilePS5081127.531113178IPR003657WRKY domain
SMARTSM007741.1E-29118177IPR003657WRKY domain
PfamPF031064.8E-20119176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDLYSLQNPN PNFDLYTDDC SLDQFDFLLE GLSNYQTDDG FCGVFGESLL SYSTSPPAVT  60
SPPEKVSNCG HDALLLVSGG ASGSAMNVMQ NNEGRKTKRD AYRPQRVAFK TKSRLDVLDD  120
GYRWRKYGKK HVKNNPNLRN YYKCTAEGCQ VKKIVERWVE DSSYVITQYV GVHTHESPSA  180
YYFSNYNNHH YHHHHGISAT DHLSSLSQCC KFLDSISSME KVHHTAHEKI ETSYIVNNFN  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21108179778Probable WRKY transcription factor 4
2lex_A2e-21108179778Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-38WRKY DNA-binding protein 51