PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0095s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 482aa MW: 51988 Da PI: 5.8674 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.2 | 2.1e-06 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft++++ e+e++ ++ n+ p +e LA+k ++ +qV +WFqN+R+ k Kaladp0095s0048.1.p 13 RFTPSEVAEMEAFLQQhnNNLPPRELFVTLAEKFsngpdrvgkiVVQMKQVWNWFQNKRYALK 75 6999*******99997658889999999*************99999*************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-10 | 4 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0017 | 7 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-7 | 13 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.36E-4 | 13 | 75 | No hit | No description |
PROSITE profile | PS50071 | 9.361 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 2.4E-36 | 136 | 263 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MGRPPGNGGP AFRFTPSEVA EMEAFLQQHN NNLPPRELFV TLAEKFSNGP DRVGKIVVQM 60 KQVWNWFQNK RYALKAKSNK APAKFDAAPL QAVPPLPAAL APALHTIPPV RQEVDGSPSS 120 NMARSLAPHS GKASINMEFE ARSARDGAWY DVAAFLSVRN KDTDDPEVLV RFVGLTPEED 180 EWIKVSKHVR HRSLPCEASE CVAVLPGDLI LCFQEAPDQA LYFDAHVLDA QRMKHDSRGC 240 RCRFLVRYDH DQFEEIVPLR KICRRPETDY RLQIYQTLRD LPTQEKKIDE SSACSVPLAN 300 NSLAESVQMP EKVDDNTVAA SSAAANQPDR ATVPSSPFAH ERSKGSPEEG NVGNAAGGNA 360 SKGTRKAEEN LEKDDAVTKR PRKSDPVENP VGQDASTPPT VPESDKQDEI QGLAVSAAAE 420 KGSSHAVAKE KEAGPTVSKD GAAVEAGNPN PTGVALTCQN QTNGGSSGGS SDVPVGAQQC 480 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 1e-43 | 134 | 267 | 1 | 134 | SHH1 SAWADEE |
4iur_B | 1e-43 | 134 | 267 | 1 | 134 | SHH1 SAWADEE |
4iut_A | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 1e-43 | 134 | 267 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015574201.1 | 1e-133 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Swissprot | Q8RWJ7 | 1e-121 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A061FF91 | 1e-131 | A0A061FF91_THECC; DNA binding protein, putative | ||||
TrEMBL | A0A2P2JYD8 | 1e-130 | A0A2P2JYD8_RHIMU; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
STRING | EOY13134 | 1e-131 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-121 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0095s0048.1.p |