PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0094s0109.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 226aa MW: 23455.7 Da PI: 9.2142 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.1e-08 | 30 | 54 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC+ f Ck+Gd+C+FaHg Kaladp0094s0109.2.p 30 KSRLCNKFNSAEGCKFGDKCHFAHG 54 6799******99************9 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 192 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC fa+ G C++GdrC+FaHg Kaladp0094s0109.2.p 192 YKTKLCEKFAK-GSCSFGDRCNFAHG 216 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.19E-7 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 28 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-12 | 29 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-6 | 30 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.02 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 2.6E-12 | 97 | 167 | IPR004087 | K Homology domain |
SuperFamily | SSF54791 | 1.07E-14 | 97 | 168 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 13.733 | 98 | 162 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.7E-15 | 98 | 166 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.4E-11 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.76E-14 | 102 | 162 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-17 | 187 | 223 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-9 | 190 | 221 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-8 | 191 | 217 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.971 | 191 | 218 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 192 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSNTGPAAPP STRSMVGPPS MSNASLPTVK SRLCNKFNSA EGCKFGDKCH FAHGDWELGK 60 PINLSFDDPQ GVGRSSGRMG GRMMEPPVSA AAACFGATAT TKVSVDASLA SAIIGKGGVN 120 SKQICRQTGV KLVIREHESD LNLRNVELEG TFEQISQASA MVRELIGNIS AMAGPPKSHG 180 GPGQGTPPSS NYKTKLCEKF AKGSCSFGDR CNFAHGAAEL RKPGL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018860219.1 | 1e-109 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 6e-75 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2I4HVP9 | 1e-108 | A0A2I4HVP9_JUGRE; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | VIT_08s0007g06400.t01 | 1e-102 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-56 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0094s0109.2.p |