PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0094s0109.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 295aa    MW: 30713.8 Da    PI: 9.577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0094s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0799123226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          k +lC+ f     Ck+Gd+C+FaHg
  Kaladp0094s0109.1.p  99 KSRLCNKFNSAEGCKFGDKCHFAHG 123
                          6799******99************9 PP
2zf-CCCH38.42e-12261285126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC  fa+ G C++GdrC+FaHg
  Kaladp0094s0109.1.p 261 YKTKLCEKFAK-GSCSFGDRCNFAHG 285
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0513361IPR000571Zinc finger, CCCH-type
SMARTSM003563.33360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-63459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-63558IPR000571Zinc finger, CCCH-type
PfamPF146081.94158No hitNo description
SuperFamilySSF902291.83E-796128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.05697125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1298128IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-599123IPR000571Zinc finger, CCCH-type
SMARTSM003560.0299124IPR000571Zinc finger, CCCH-type
SMARTSM003222.6E-12166236IPR004087K Homology domain
SuperFamilySSF547911.9E-14166237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.8E-15167235IPR004088K Homology domain, type 1
PROSITE profilePS5008413.733167231IPR004088K Homology domain, type 1
PfamPF000132.2E-11169233IPR004088K Homology domain, type 1
CDDcd001051.64E-13171231No hitNo description
Gene3DG3DSA:4.10.1000.101.9E-17256292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-8259290IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.971260287IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTRKRGPRE AGISANGGGF KKSKQEMDSS GIGSKSKPCT KFFSTTGCPF GEGCHFLHYV  60
PGGYSAVAQM SNTGPAAPPS TRSMVGPPSM SNASLPTVKS RLCNKFNSAE GCKFGDKCHF  120
AHGDWELGKP INLSFDDPQG VGRSSGRMGG RMMEPPVSAA AACFGATATT KVSVDASLAS  180
AIIGKGGVNS KQICRQTGVK LVIREHESDL NLRNVELEGT FEQISQASAM VRELIGNISA  240
MAGPPKSHGG PGQGTPPSSN YKTKLCEKFA KGSCSFGDRC NFAHGAAELR KPGL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860219.11e-153PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4HVP91e-152A0A2I4HVP9_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGVIT_08s0007g06400.t011e-143(Vitis vinifera)
STRINGcassava4.1_012954m1e-143(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-55C3H family protein