PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0093s0175.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 486aa MW: 53667.4 Da PI: 4.503 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W Ed +l+d+vk++G g+W+++ + g+ R++k+c++rw ++l Kaladp0093s0175.1.p 32 KGSWVSSEDAILADYVKKHGEGNWNAVQKFSGLSRCGKSCRLRWVNHL 79 799******************************************996 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ eE+ ++++++++lG++ W++ a++++ gRt++++k++w++ Kaladp0093s0175.1.p 85 KGAFSLEEERKIIELHAKLGNK-WSRLAAELP-GRTDNDIKNFWNT 128 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.477 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-26 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.04E-10 | 34 | 79 | No hit | No description |
PROSITE profile | PS51294 | 24.094 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-11 | 87 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 87 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MERHMSDEIS DSPSGEEVDG EGKLSGRGPL NKGSWVSSED AILADYVKKH GEGNWNAVQK 60 FSGLSRCGKS CRLRWVNHLK SNLKKGAFSL EEERKIIELH AKLGNKWSRL AAELPGRTDN 120 DIKNFWNTRI KKLQRAGLPI YPPDVCLKKA NDSQKSPDSG TLSDHLTSGH FFMEASNFVI 180 PEFKIERPLD LRLYSYPSPF LDSPTSNMLP QGLDHPQERP PESNNTPRGL CNTDAWEKQH 240 PLYQLPPPPE SHSCADPSLC FPVVSHALIN GNPSSFEPDF GSVKLELPSL QSLESDFILG 300 DDSATPILPF EDSDPLAQFT QAGTNPLQYT PDTDGLLESV ICPPKSAKSS KDEFGETYPE 360 HKTTGDGDDL YFDFSGNELE AFAGHITPMD ASIPSIFSDF TTSIDELQST EVGTEPGTLY 420 ADFEQYLTCP NMNGNSDPYQ LDPSRPDTWF NANLLSPNSE QGRNYHTLQQ ALSAIAGNDT 480 QQLQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 30 | 132 | 5 | 106 | B-MYB |
1h8a_C | 9e-25 | 30 | 132 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 4e-63 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0093s0175.1.p |