PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0091s0163.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 231aa MW: 25412.7 Da PI: 10.2782 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.2e-33 | 14 | 68 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLH++Fv+av++LGG+ekAtPk++++lm++kgLtl+h+kSHLQkYR+ Kaladp0091s0163.1.p 14 KPRLRWTPELHSCFVDAVAKLGGPEKATPKAVMRLMGLKGLTLYHLKSHLQKYRI 68 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.427 | 11 | 71 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-31 | 12 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-16 | 13 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-23 | 14 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 16 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.0E-18 | 114 | 154 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MERVYVGGKA AEPKPRLRWT PELHSCFVDA VAKLGGPEKA TPKAVMRLMG LKGLTLYHLK 60 SHLQKYRIGQ QARKSSSEQS RDSSGDSHKM QASGATATSS GASSGQGDAA LIYAARSQTE 120 AQKRLQDQLE VQRRLQMRIE AQGKYLQSVL EKARTNLTLH TGSSPAAGSD QARAQQLTGF 180 NLALDDDVNG VQKDTDANFR SKDIFLSFLQ NQHREMQEDE KPAVKQLRLF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-20 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-20 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-20 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-20 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080374.1 | 3e-67 | myb family transcription factor PHL11 isoform X1 | ||||
Swissprot | Q94A57 | 3e-54 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | D7U3R9 | 3e-64 | D7U3R9_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0033g00300.t01 | 5e-65 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0091s0163.1.p |
Publications ? help Back to Top | |||
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