PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0091s0012.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 339aa    MW: 38105.3 Da    PI: 5.3627
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0091s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5361341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+++yLk+kveg k+el evi+ +d+yk++Pw+Lp+   + + + ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Kaladp0091s0012.1.p   6 LPPGFRFHPTDEELIDYYLKRKVEGLKIEL-EVIPVIDLYKYDPWELPElsFLPNMDMEWFFFCPRDRKYPHGSRTNRATRAGYWKATGK 94 
                          79****************************.99**************94345556788******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++++++lvg +ktLvfy+grap+g + dWvmheyrl
  Kaladp0091s0012.1.p  95 DRRIVCQSSSLVGYRKTLVFYRGRAPQGDRMDWVMHEYRL 134
                          **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-575158IPR003441NAC domain
PROSITE profilePS5100557.826159IPR003441NAC domain
PfamPF023654.7E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSGGSLPPGF RFHPTDEELI DYYLKRKVEG LKIELEVIPV IDLYKYDPWE LPELSFLPNM  60
DMEWFFFCPR DRKYPHGSRT NRATRAGYWK ATGKDRRIVC QSSSLVGYRK TLVFYRGRAP  120
QGDRMDWVMH EYRLSDDLPD TSGMPNAPGA FALCRVLKRS DKTYGSKNTV SGSRSRSMSS  180
AIVSNEPSHL STEESQPQTN YGSNGSNYST PNASPYSIAA PLAESVEPHH PNPSHFWVSP  240
DLILDSSSEH QQEGALWQHY PQNEDIVAPM TMWQPYGDIS PCTSFSNLNE GTSATGGVCG  300
TATNMSPPHP ENADYMSFWG NDDITFEDYS LLNNHNLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-48516016166NO APICAL MERISTEM PROTEIN
1ut4_B6e-48516016166NO APICAL MERISTEM PROTEIN
1ut7_A6e-48516016166NO APICAL MERISTEM PROTEIN
1ut7_B6e-48516016166NO APICAL MERISTEM PROTEIN
3swm_A8e-48516019169NAC domain-containing protein 19
3swm_B8e-48516019169NAC domain-containing protein 19
3swm_C8e-48516019169NAC domain-containing protein 19
3swm_D8e-48516019169NAC domain-containing protein 19
3swp_A8e-48516019169NAC domain-containing protein 19
3swp_B8e-48516019169NAC domain-containing protein 19
3swp_C8e-48516019169NAC domain-containing protein 19
3swp_D8e-48516019169NAC domain-containing protein 19
4dul_A6e-48516016166NAC domain-containing protein 19
4dul_B6e-48516016166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280894.21e-123PREDICTED: NAC domain-containing protein 86
SwissprotO496976e-88NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A438EQR21e-122A0A438EQR2_VITVI; NAC domain-containing protein 71
TrEMBLA5ANR61e-122A5ANR6_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01040.t011e-122(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.16e-90NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]