PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0101.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 297aa    MW: 32841.2 Da    PI: 7.0775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.22.4e-47101511129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                          lppGfrF Ptdeelv++yL kk+ ++         +            + e+d++ vePw+Lp+  k + +ewyfFs r++kyatg r+n
  Kaladp0089s0101.1.p  10 LPPGFRFCPTDEELVCHYLSKKTIESAatacK---DeaaeglknmgmSMVEIDLHAVEPWQLPEVGKLNGTEWYFFSFRERKYATGFRTN 96 
                          79*******************98777744440...24566777777459**************76677899******************* PP

                  NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          rat sgyWkatgkd+++l+  ++ +vg++ktLvfyk+rap+g kt W+mhe+rle
  Kaladp0089s0101.1.p  97 RATMSGYWKATGKDQTILDPsDRCVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 151
                          *******************867778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-568169IPR003441NAC domain
PROSITE profilePS5100553.39110169IPR003441NAC domain
PfamPF023652.3E-2611150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGLKEVGARL PPGFRFCPTD EELVCHYLSK KTIESAATAC KDEAAEGLKN MGMSMVEIDL  60
HAVEPWQLPE VGKLNGTEWY FFSFRERKYA TGFRTNRATM SGYWKATGKD QTILDPSDRC  120
VVGMRKTLVF YKNRAPNGIK TGWIMHEFRL ETPHFPPKED WVLCRVFHKA KISASSNHGC  180
CQPHAAMLPC VISQNQISLL SSTQNGNMVS NHKGLLNNHN KHYGAVLKFG AQEEKNPATA  240
ASSVTEMNSV DDGGGEGRGG YDFLWGINLE EINSLAPSDG GTLQDHQMDA NSLSFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4211694165NO APICAL MERISTEM PROTEIN
1ut4_B2e-4211694165NO APICAL MERISTEM PROTEIN
1ut7_A2e-4211694165NO APICAL MERISTEM PROTEIN
1ut7_B2e-4211694165NO APICAL MERISTEM PROTEIN
3swm_A1e-4211697168NAC domain-containing protein 19
3swm_B1e-4211697168NAC domain-containing protein 19
3swm_C1e-4211697168NAC domain-containing protein 19
3swm_D1e-4211697168NAC domain-containing protein 19
3swp_A1e-4211697168NAC domain-containing protein 19
3swp_B1e-4211697168NAC domain-containing protein 19
3swp_C1e-4211697168NAC domain-containing protein 19
3swp_D1e-4211697168NAC domain-containing protein 19
4dul_A2e-4211694165NAC domain-containing protein 19
4dul_B2e-4211694165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493788.16e-97NAC domain-containing protein 21/22
SwissprotQ84TE62e-58NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S2XUB51e-95A0A1S2XUB5_CICAR; NAC domain-containing protein 21/22
STRINGXP_004493788.12e-96(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-85NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]