PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0089s0089.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 222aa MW: 24093.5 Da PI: 7.0897

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0089s0089.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.2e-40	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ + Kaladp0089s0089.1.p 7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLSHLPISDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVT 96 7***********************89********************************************************** PP DUF260 90 lkaelallkee 100 l+++la+l+++ Kaladp0089s0089.1.p 97 LQSQLASLRHQ 107 *****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.347	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-38	7	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLSHLPISD 60 RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVTLQSQ LASLRHQAAQ SLANGSSSII 120 GNTMNHQDTQ QSWYQSGLSH TLNQFTQQNN HLNFHHQNVQ FSQSNPMNVG NSSMGNSGNA 180 TLVNNTMNSF GSFEETSDQS FGSNNFDDDL QSVAFGYFQN S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	2	101	6	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	2	101	6	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023886753.1	3e-87	LOB domain-containing protein 29-like
Swissprot	Q9M2J7	1e-69	LBD29_ARATH; LOB domain-containing protein 29
Swissprot	Q9SLB6	2e-69	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A2C9UQF8	5e-85	A0A2C9UQF8_MANES; Uncharacterized protein
STRING	cassava4.1_026776m	9e-86	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	5e-61	LBD family protein

Link Out ? help Back to Top
Phytozome	Kaladp0089s0089.1.p

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]