PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0017.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 216aa    MW: 24431.6 Da    PI: 6.7823
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.25.3e-26131461128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                          lppG+rF Pt+++l+ +yL+ k + ++ ++  ++i e+d++ ++P +L +       + +++++wy +s+r ++++  +r +r t+ gyW
  Kaladp0089s0017.1.p  13 LPPGCRFFPTEQQLLRHYLRGKNSVSDdHSNVNMIGEFDVLGHDPFELVEigcfeyGIGGRRRHWYCYSPRVERKR--TRMRR-TRGGYW 99 
                          79******************99777663344477**************7456776555557779999999988765..46666.789*** PP

                  NAM  84 katgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          k +gk ++v+ ++g ++g ++  vf  g   a++g  tdWv+ ey+l
  Kaladp0089s0017.1.p 100 KRKGKVRDVVGEGGVVTGKRTEYVFMLGefGAKSGLLTDWVVYEYAL 146
                          **************************65348999***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-299161IPR003441NAC domain
PROSITE profilePS5100533.8213161IPR003441NAC domain
PfamPF023652.1E-1514146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MADPKNPAQR APLPPGCRFF PTEQQLLRHY LRGKNSVSDD HSNVNMIGEF DVLGHDPFEL  60
VEIGCFEYGI GGRRRHWYCY SPRVERKRTR MRRTRGGYWK RKGKVRDVVG EGGVVTGKRT  120
EYVFMLGEFG AKSGLLTDWV VYEYALIEED KDFVLCRAFE KSRQREDASH AANFGVSGDS  180
CLHDSSDLAS IMEQGDFIEL DDLLKPLPSM DNAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-18616110165NO APICAL MERISTEM PROTEIN
1ut4_B2e-18616110165NO APICAL MERISTEM PROTEIN
1ut7_A2e-18616110165NO APICAL MERISTEM PROTEIN
1ut7_B2e-18616110165NO APICAL MERISTEM PROTEIN
3swm_A2e-18616113168NAC domain-containing protein 19
3swm_B2e-18616113168NAC domain-containing protein 19
3swm_C2e-18616113168NAC domain-containing protein 19
3swm_D2e-18616113168NAC domain-containing protein 19
3swp_A2e-18616113168NAC domain-containing protein 19
3swp_B2e-18616113168NAC domain-containing protein 19
3swp_C2e-18616113168NAC domain-containing protein 19
3swp_D2e-18616113168NAC domain-containing protein 19
4dul_A2e-18616110165NAC domain-containing protein 19
4dul_B2e-18616110165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185101RKRTRMRRTRGGYWKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282899.12e-50PREDICTED: NAC domain-containing protein 72 isoform X1
TrEMBLF6H1B74e-49F6H1B7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10250.t017e-50(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.29e-20NAC family protein