PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 237aa    MW: 25975.2 Da    PI: 9.8729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20131181256
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr ++ +grW AeIrd +   g + r++lg+f+taeeAa+a++aa+++l+g+
  Kaladp0089s0001.1.p 131 RYRGVRKRP-WGRWSAEIRDrV---G-KCRHWLGTFDTAEEAAQAYDAAARRLRGP 181
                          59*******.**********55...2.5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-30131188IPR001471AP2/ERF domain
SMARTSM003804.5E-35131194IPR001471AP2/ERF domain
CDDcd000182.16E-19131190No hitNo description
PfamPF008472.3E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-22131190IPR016177DNA-binding domain
PRINTSPR003671.8E-10132143IPR001471AP2/ERF domain
PRINTSPR003671.8E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTHESTTDLP IFSNRIIPPS YSYDPHHLLP PTLLDKDVSY LICNSHHHHH HQPMQTPQPI  60
VDAPPSSHQL LEGIAAVVGL NVLYGVQHHP TTTTAATTTT CMSSSTSVSL LPEREAAKTT  120
AGSGGGEQVI RYRGVRKRPW GRWSAEIRDR VGKCRHWLGT FDTAEEAAQA YDAAARRLRG  180
PKARTNFQIS FSPSSYPFTE SAAAATMLTA SSSRHQHPPT GPTRRRLRPP PAHMLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17121187471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-22ERF family protein