PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0099.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 405aa    MW: 44891.2 Da    PI: 8.5829
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0099.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.61.1e-3298202199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Kaladp0088s0099.2.p  98 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 187
                          89****************************66677899*************************************************666 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+ ++ +l++ ++r+
  Kaladp0088s0099.2.p 188 GEaEKHRLFIDWRRR 202
                          88899999*999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4192203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-3095198IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-2596185No hitNo description
PfamPF023627.5E-3098202IPR003340B3 DNA binding domain
PROSITE profilePS5086314.57998203IPR003340B3 DNA binding domain
SMARTSM010193.9E-2498203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEYGSKDEEY NNSIRHDFPA YGSGSSRDWF ASIKFAAADD SSDIMEASPL TANENNYDHE  60
HVRRVSDSHQ QQQHYAQQQA LGIGIGGQIC NIEREHMFDK VVTPSDVGKL NRLVIPKQHA  120
EKYFPLDSSS NEKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI  180
VSFQRGVGEA EKHRLFIDWR RRPITTLPID GSPFYSQFHR SVGGTPSWSP LLLRPPPARV  240
HPSISFQIPN HPGSHLFSTG YGGSSGNYMG QVFTNKTSVV YLTSPEGFGM VRGRAGEGIG  300
ERIPVVIQSV PVVQGKKVET AAKRLRLFGV NMECPASPDT STSDEFEILS SSSGIPVSST  360
TPRHHLSQLD PSSSTLFLPS STRMYNGTLV SNNGKMSKSL DLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-67932033114B3 domain-containing transcription factor NGA1
5os9_B1e-67932033114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439872.11e-100PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_012439873.11e-100PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827993e-73NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0D2Q2163e-99A0A0D2Q216_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SDP42e-99A0A2P5SDP4_GOSBA; Uncharacterized protein
STRINGGorai.008G261100.11e-100(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]