PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0088s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 81aa MW: 8519.82 Da PI: 8.7786 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.2 | 1.3e-28 | 7 | 76 | 1 | 69 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar+ Kaladp0088s0031.1.p 7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAQFAAIHKVFGASNVSKLLAHLPVSDRSEAALTISYEAQARI 76 7*************************89****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.617 | 6 | 80 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-27 | 7 | 77 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MTGSSSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAQFAAI HKVFGASNVS KLLAHLPVSD 60 RSEAALTISY EAQARIAGEQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-26 | 3 | 76 | 7 | 79 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-26 | 3 | 76 | 7 | 79 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023886753.1 | 3e-46 | LOB domain-containing protein 29-like | ||||
Refseq | XP_023891488.1 | 3e-46 | LOB domain-containing protein 29-like | ||||
Swissprot | Q5UG13 | 3e-44 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A2N9HGQ9 | 2e-44 | A0A2N9HGQ9_FAGSY; Uncharacterized protein | ||||
TrEMBL | B9GS34 | 1e-44 | B9GS34_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04200.1 | 2e-45 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-44 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0088s0031.1.p |
Publications ? help Back to Top | |||
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