PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0175.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 293aa    MW: 30520.7 Da    PI: 9.7393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-0799124227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          k ++C+ f     Ck+Gd+C+FaHg+
  Kaladp0087s0175.1.p  99 KSRICNKFNSAEGCKFGDKCHFAHGE 124
                          5689999999999***********96 PP
2zf-CCCH32.12e-10258282126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC +f + G C +GdrC+FaHg
  Kaladp0087s0175.1.p 258 YKTKLCENFGK-GSCTFGDRCHFAHG 282
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.33259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3523260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-63358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-73457IPR000571Zinc finger, CCCH-type
PfamPF146080.494057No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1295127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-796127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18897125IPR000571Zinc finger, CCCH-type
SMARTSM003560.01199124IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-599124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.101.4E-16166236IPR004088K Homology domain, type 1
SMARTSM003221.3E-12166236IPR004087K Homology domain
PROSITE profilePS5008414.571167231IPR004088K Homology domain, type 1
SuperFamilySSF547914.68E-15167239IPR004088K Homology domain, type 1
PfamPF000131.2E-11169233IPR004088K Homology domain, type 1
CDDcd001053.49E-15169231No hitNo description
Gene3DG3DSA:4.10.1000.109.9E-17254288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-9256288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211257284IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6257283IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8258282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDARKRGRPE AGLNGNGGLK KPKPELDSTG IGSKSKPCTK FFSTAGCPFG EGCHFAHYVP  60
GGYSAVAQLS NMGPAAVPAT RGMVAPPPMK NGSAPPAVKS RICNKFNSAE GCKFGDKCHF  120
AHGEWEIGKP VAPSFDDHRG MGPMAGRGGR LMDPSFPAAP PSGFGVNATT KISVDASLAG  180
AIIGKGGVNS KQICRQTGVK LSIRDHESDP NLRNIELEGS FEQISQASGM VRELIVNVSP  240
MSAAPKSRTP NAAPSSNYKT KLCENFGKGS CTFGDRCHFA HGAAELRTTT TL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350856.11e-152zinc finger CCCH domain-containing protein 31 isoform X1
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4DFQ71e-149A0A2I4DFQ7_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGGLYMA19G32910.11e-148(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-81C3H family protein