PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0087s0153.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 508aa MW: 57609.7 Da PI: 6.2234

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0087s0153.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.2	7e-32	2	72	57	128
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s + ++vg+kktLv+y+grap+g++tdWvmheyrl Kaladp0087s0153.1.p 2 EWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-QMREVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 72 8***********************************.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.554	1	95	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-37	2	95	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	3	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MEWFFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVTSQ MREVGMKKTL VYYRGRAPHG 60 SRTDWVMHEY RLDERECLSS NGLQDSYALC RIFKKTAIGP KIDDNACSST SSALQGCSGG 120 GQEIQVHHHA TLHHPNQMVH RFDDYYSDNN NLGGLAASSS TSNNNFERHF NIDTPTNDAM 180 DNKWMQFLSQ DALDLTASYQ SFPNLPSKVD IALECARMQH RFSMPPLEVE DLTPDDMTTI 240 ATTMTHDNNN EVTLLQAWGA GSHSSPLETG FTFNTNHQVQ YNNDVSTSYF RSCHNNDPSD 300 ADMKYIGING DSEEEQTFLE KHKVIPIENI TNFQTGVRQE VPHDVHGNQS GQLSDYKRLD 360 DTGFNSFALR LTDIDNQDDF RFLDESHIDE LSNYSAATEV IEKIEVTHGL FIASHQMAHT 420 YFHQIVSSTT VQVELNHGLD SHVYEVTPKL KTDSESTRFT SYPVPVHDNA LKRTGKSIIN 480 VFASFLMYYF MSKKSLMHSH IQISGKD*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MEWFFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVTSQ MREVGMKKTL VYYRGRAPHG  60
SRTDWVMHEY RLDERECLSS NGLQDSYALC RIFKKTAIGP KIDDNACSST SSALQGCSGG  120
GQEIQVHHHA TLHHPNQMVH RFDDYYSDNN NLGGLAASSS TSNNNFERHF NIDTPTNDAM  180
DNKWMQFLSQ DALDLTASYQ SFPNLPSKVD IALECARMQH RFSMPPLEVE DLTPDDMTTI  240
ATTMTHDNNN EVTLLQAWGA GSHSSPLETG FTFNTNHQVQ YNNDVSTSYF RSCHNNDPSD  300
ADMKYIGING DSEEEQTFLE KHKVIPIENI TNFQTGVRQE VPHDVHGNQS GQLSDYKRLD  360
DTGFNSFALR LTDIDNQDDF RFLDESHIDE LSNYSAATEV IEKIEVTHGL FIASHQMAHT  420
YFHQIVSSTT VQVELNHGLD SHVYEVTPKL KTDSESTRFT SYPVPVHDNA LKRTGKSIIN  480
VFASFLMYYF MSKKSLMHSH IQISGKD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-33	2	95	72	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-33	2	95	72	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-33	2	95	72	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-33	2	95	72	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	2	95	75	168	NAC domain-containing protein 19
3swm_B	4e-33	2	95	75	168	NAC domain-containing protein 19
3swm_C	4e-33	2	95	75	168	NAC domain-containing protein 19
3swm_D	4e-33	2	95	75	168	NAC domain-containing protein 19
3swp_A	4e-33	2	95	75	168	NAC domain-containing protein 19
3swp_B	4e-33	2	95	75	168	NAC domain-containing protein 19
3swp_C	4e-33	2	95	75	168	NAC domain-containing protein 19
3swp_D	4e-33	2	95	75	168	NAC domain-containing protein 19
4dul_A	4e-33	2	95	72	165	NAC domain-containing protein 19
4dul_B	4e-33	2	95	72	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	2e-92	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Kaladp0087s0153.1.p