PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0142.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 501aa    MW: 55714.1 Da    PI: 7.0458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0142.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-063213351226
                          TS--TTTTT-SS-SS CS
              zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                          +G C++Gd+C+F H+
  Kaladp0085s0142.2.p 321 SGSCPRGDKCHFVHD 335
                          7*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.21.105.9E-56209IPR029052Metallo-dependent phosphatase-like
CDDcd073801.46E-428234No hitNo description
PROSITE profilePS5010313.037309337IPR000571Zinc finger, CCCH-type
SMARTSM003560.011311336IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4313335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5313338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6315337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549341369IPR000571Zinc finger, CCCH-type
SMARTSM003560.63343368IPR000571Zinc finger, CCCH-type
PfamPF046771.3E-31385483IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541976.12E-9385462IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.104.8E-6388480IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAAPPRILLC GDVLGRLDQL YKRFAAVNKS AGPFDVLLCV GQFFPQSSEQ LDQFMNYVEG  60
RVEIPIATYF IGDFGAGAPK VLTAASKAAQ NQGFKMDGLK ISDNLYWLKG SGKFQLQGLS  120
VAYLSGRRSS IIQPFGTYSQ DDVDALRAMA EEPEIVDIFL TNEWPSGITN KAVESGIPPG  180
VSDSSGFDST VAELVSEIKP RYHVAGTMGV FYAREPYINV DSSHVTRFLG LAPVRNKDKQ  240
KFIHAISPTP ASIMSAVEMC KKPPNASLSP YIDLEKISQA DSETKRPAES DLQYWRYDVS  300
QKRQKTGAGD AERRCFKFVS SGSCPRGDKC HFVHDNDARE QYLRGVCFDF INKGKCEKGS  360
DCSFKHSFQD NAEDVPKMRT GNGKVNRSKE CWFCLSSPNI ESHLIISIGD SFYCALPKGP  420
LLEDHVLVVP IEHAPNTLST PSESETELQK FLSSLKAYYK NLDKEVVWFE WIYRRGTHAN  480
LQVKYNFASC SWSDSVHNLQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842889.10.0zinc finger CCCH domain-containing protein 64
RefseqXP_022842890.10.0zinc finger CCCH domain-containing protein 64
RefseqXP_022842891.10.0zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A067ERJ80.0A0A067ERJ8_CITSI; Uncharacterized protein
STRINGXP_006475458.10.0(Citrus sinensis)