PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0085s0142.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 599aa MW: 66871 Da PI: 6.8764 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.3e-06 | 321 | 335 | 12 | 26 |
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++Gd+C+F H+ Kaladp0085s0142.1.p 321 SGSCPRGDKCHFVHD 335 7*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.21.10 | 8.7E-5 | 6 | 209 | IPR029052 | Metallo-dependent phosphatase-like |
CDD | cd07380 | 2.15E-42 | 8 | 234 | No hit | No description |
PROSITE profile | PS50103 | 13.037 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 313 | 338 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 313 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 315 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 341 | 369 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.63 | 343 | 368 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 3.0E-36 | 385 | 498 | IPR006768 | Cwf19-like, C-terminal domain-1 |
SuperFamily | SSF54197 | 3.23E-9 | 385 | 464 | IPR011146 | HIT-like domain |
Gene3D | G3DSA:3.30.428.10 | 7.4E-6 | 388 | 479 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 9.0E-18 | 514 | 595 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MAAPPRILLC GDVLGRLDQL YKRFAAVNKS AGPFDVLLCV GQFFPQSSEQ LDQFMNYVEG 60 RVEIPIATYF IGDFGAGAPK VLTAASKAAQ NQGFKMDGLK ISDNLYWLKG SGKFQLQGLS 120 VAYLSGRRSS IIQPFGTYSQ DDVDALRAMA EEPEIVDIFL TNEWPSGITN KAVESGIPPG 180 VSDSSGFDST VAELVSEIKP RYHVAGTMGV FYAREPYINV DSSHVTRFLG LAPVRNKDKQ 240 KFIHAISPTP ASIMSAVEMC KKPPNASLSP YIDLEKISQA DSETKRPAES DLQYWRYDVS 300 QKRQKTGAGD AERRCFKFVS SGSCPRGDKC HFVHDNDARE QYLRGVCFDF INKGKCEKGS 360 DCSFKHSFQD NAEDVPKMRT GNGKVNRSKE CWFCLSSPNI ESHLIISIGD SFYCALPKGP 420 LLEDHVLVVP IEHAPNTLST PSESETELQK FLSSLKAYYK NLDKEVVWFE WIYRRGTHAN 480 LQVVPIPSSR VSSVKDIFIL AAEKLGFKFK VTESRELLRA QFDANMSLFY VELPCGTVLS 540 HTVDENEKFP AQFGREVLAG LLNMADRADW RKCTSSKEEE MEMASRFKKK FEAYDPNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6id0_U | 1e-12 | 389 | 595 | 673 | 887 | CWF19-like protein 2 |
6id1_U | 1e-12 | 389 | 595 | 673 | 887 | CWF19-like protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842889.1 | 0.0 | zinc finger CCCH domain-containing protein 64 | ||||
Refseq | XP_022842890.1 | 0.0 | zinc finger CCCH domain-containing protein 64 | ||||
Refseq | XP_022842891.1 | 0.0 | zinc finger CCCH domain-containing protein 64 | ||||
Swissprot | Q84WU9 | 0.0 | C3H64_ARATH; Zinc finger CCCH domain-containing protein 64 | ||||
TrEMBL | A0A067EV76 | 0.0 | A0A067EV76_CITSI; Uncharacterized protein | ||||
STRING | XP_006475458.1 | 0.0 | (Citrus sinensis) |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0085s0142.1.p |