PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0085s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12052.5 Da PI: 3.9809 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.5e-07 | 18 | 50 | 11 | 45 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 l+d+ ++ G + W++Ia ++g g+ +k++ +++ Kaladp0085s0090.1.p 18 ALLDVNEEVGDR-WDKIATMVG-GKNAKEVEDHYK 50 677888899988.*********.**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-9 | 5 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-4 | 16 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 17 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-5 | 17 | 50 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MLKDEAWSWE KNKKFELALL DVNEEVGDRW DKIATMVGGK NAKEVEDHYK ALVQDVNLIE 60 SGLFDDDDEL NELAEPQIIQ KSAITPPLGL CFLSVEIDSH QGCDCDS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281797.1 | 2e-16 | PREDICTED: protein RADIALIS-like 4 | ||||
TrEMBL | A0A438BNG6 | 6e-15 | A0A438BNG6_VITVI; Transcription factor RADIALIS | ||||
STRING | VIT_07s0005g02730.t01 | 2e-15 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18328.1 | 1e-14 | RAD-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0085s0090.1.p |