PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0085s0056.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 223aa MW: 23428.6 Da PI: 9.4633 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ Kaladp0085s0056.2.p 31 KSRICNKFNSAEGCKFGDKCHFAHGE 56 6689999999999***********96 PP | |||||||
2 | zf-CCCH | 32.6 | 1.4e-10 | 189 | 213 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f + G C +GdrC+FaHg Kaladp0085s0056.2.p 189 YKTKLCENFGK-GSCTFGDRCHFAHG 213 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-12 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-7 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 3.4E-12 | 98 | 168 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.5E-16 | 98 | 168 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.424 | 99 | 163 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 2.19E-15 | 99 | 178 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.80E-15 | 101 | 163 | No hit | No description |
Pfam | PF00013 | 1.2E-11 | 102 | 165 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-16 | 185 | 218 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-9 | 187 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 188 | 214 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.211 | 188 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSNMGPAAVP PTRGMTAPPP MKNGSAPPAV KSRICNKFNS AEGCKFGDKC HFAHGEWEIG 60 KPFAPSFDDH RGMGTTTGRG GRMMDPSFPA PPPSGFGVNA STKISVDASL AGAIIGKGGV 120 NSKQICRQTG VKLSIRDHES DPNLRNIELE GSFEQISQAS GMVRELIVNV SPMSSAAPTK 180 MRAHASSNYK TKLCENFGKG SCTFGDRCHF AHGAAELRTS TT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021643121.1 | 1e-107 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 6e-74 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | I1N980 | 1e-103 | I1N980_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32910.1 | 1e-103 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0085s0056.2.p |