PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0056.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 291aa    MW: 30583.6 Da    PI: 9.7394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-0799124227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          k ++C+ f     Ck+Gd+C+FaHg+
  Kaladp0085s0056.1.p  99 KSRICNKFNSAEGCKFGDKCHFAHGE 124
                          5689999999999***********96 PP
2zf-CCCH32.11.9e-10257281126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC +f + G C +GdrC+FaHg
  Kaladp0085s0056.1.p 257 YKTKLCENFGK-GSCTFGDRCHFAHG 281
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.53259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3523260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-63358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-83457IPR000571Zinc finger, CCCH-type
PfamPF146080.534057No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1295127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-796127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18897125IPR000571Zinc finger, CCCH-type
SMARTSM003560.01199124IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-599124IPR000571Zinc finger, CCCH-type
SMARTSM003223.4E-12166236IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.2E-16166236IPR004088K Homology domain, type 1
PROSITE profilePS5008414.424167231IPR004088K Homology domain, type 1
SuperFamilySSF547913.94E-15167246IPR004088K Homology domain, type 1
CDDcd001059.16E-15169231No hitNo description
PfamPF000132.0E-11170233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-16253286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-9255286IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211256283IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8257281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDARKRGRLD SGFNGNGGFK KPKPELDSTG IGSKSKPCTK FFSTSGCPFG EGCHFAHYVP  60
GGYSAVAQMS NMGPAAVPPT RGMTAPPPMK NGSAPPAVKS RICNKFNSAE GCKFGDKCHF  120
AHGEWEIGKP FAPSFDDHRG MGTTTGRGGR MMDPSFPAPP PSGFGVNAST KISVDASLAG  180
AIIGKGGVNS KQICRQTGVK LSIRDHESDP NLRNIELEGS FEQISQASGM VRELIVNVSP  240
MSSAAPTKMR AHASSNYKTK LCENFGKGSC TFGDRCHFAH GAAELRTSTT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643121.11e-147zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9V9031e-145A0A2C9V903_MANES; Uncharacterized protein
STRINGcassava4.1_012954m1e-146(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-80C3H family protein