PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0083s0058.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 737aa MW: 83098.9 Da PI: 6.4749 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.1 | 8.7e-115 | 362 | 733 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+av+++d++ +lL+++++++s++gd mqR+a+yf+++L+arla+s++ y+++ ++ s +++l+a++++ +sP+ Kaladp0083s0058.1.p 362 LRTLLTLCAQAVAANDQRGSMELLKQIRQHSSETGDGMQRMAHYFANGLEARLAGSGTPFYRTMLHRNRS---AADVLKAYHMYLAISPF 448 5789**********************************************************99999998...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s++ aN++I++ +e+++++HiiDf+i+ G+QWp+L+q L++Rp+gpp++ iTg++ p++g ++++ etg+rLa++Ae+++vpfe+ Kaladp0083s0058.1.p 449 RKMSNFFANKTIMQVAENKTKLHIIDFGIQFGFQWPCLIQRLSARPGGPPKIHITGIDFPQPGfrPADKVDETGRRLANYAESFDVPFEY 538 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n +ak++e++++++L+++ +E+l+Vn+ +++ ++ldesv+++s+r++v+kl+++++P+++++ + +n++ F rf e++ +ys+l+ Kaladp0083s0058.1.p 539 NG-IAKEWETITTDDLKLRDDEVLVVNCLFNMRNVLDESVKVDSPRNAVMKLIRKTNPTIFIHGVVNGTYNAPFFISRFRESVFHYSSLY 627 **.7************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+le+++pr+ er +E+e++gre++nvvaceg+er+er et ++W+ r +aGF p+pl+e+++ ak ++ ++ + +++ e+ ++l Kaladp0083s0058.1.p 628 DMLETNIPRDIPERLLIEKEIFGRELMNVVACEGSERTERPETCKQWQVRTLRAGFVPLPLNEEIMRLAKERVKSCYHKDFMIGEDGNWL 717 *****************************************************************************889********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r + +S+Wr Kaladp0083s0058.1.p 718 IQGWKGRIAYGLSSWR 733 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.801 | 336 | 713 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-112 | 362 | 733 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MVMDQGVTGY FDSMKGLDMN ELIKALPDQN LLYGINSHSN AFPVAPDSRN SGYETKMGFQ 60 AGVECQEDCD FSDIVLKYIS QILMEENLEE KKYLEEQESA ALLAAEKSLY EAIGKTHPTA 120 LEHVLTQTAD TNVGESSNSN TTSGVFDYSS CSSGSPVEPL EQILNFEVAE CQHLSSTSVS 180 SSQSSFNSYS STGYVGNRLA VSPINTLVEH HMLDEQSTRR FAKGLMGTNK SFPTEDHSFS 240 SCLYSEWLLK SSKDVMIKDE EKNEHGYSAH GRKSRKSSHP KDNFMDEERN NKMSATYNET 300 VLRTEMFDMV LLNCGTEAAE RESALREALL NEANKNGQQN VQAKGAKGRG KKSKSKRELV 360 DLRTLLTLCA QAVAANDQRG SMELLKQIRQ HSSETGDGMQ RMAHYFANGL EARLAGSGTP 420 FYRTMLHRNR SAADVLKAYH MYLAISPFRK MSNFFANKTI MQVAENKTKL HIIDFGIQFG 480 FQWPCLIQRL SARPGGPPKI HITGIDFPQP GFRPADKVDE TGRRLANYAE SFDVPFEYNG 540 IAKEWETITT DDLKLRDDEV LVVNCLFNMR NVLDESVKVD SPRNAVMKLI RKTNPTIFIH 600 GVVNGTYNAP FFISRFRESV FHYSSLYDML ETNIPRDIPE RLLIEKEIFG RELMNVVACE 660 GSERTERPET CKQWQVRTLR AGFVPLPLNE EIMRLAKERV KSCYHKDFMI GEDGNWLIQG 720 WKGRIAYGLS SWRPAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-48 | 362 | 733 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017223003.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
TrEMBL | A0A2N9ESZ9 | 0.0 | A0A2N9ESZ9_FAGSY; Uncharacterized protein | ||||
STRING | XP_006486464.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-174 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0083s0058.1.p |