PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0082s0024.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 905aa MW: 99481.6 Da PI: 6.3746

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0082s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.7	9.9e-28	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+le+l+++F++++kdAAk+Lgvc+T+LKriCR+ GIkRWP+Rkik++ Kaladp0082s0024.1.p 591 AEKAITLEVLQRHFAGSLKDAAKSLGVCPTTLKRICRNQGIKRWPSRKIKKV 642 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.472	579	662	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-24	595	642	IPR003035	RWP-RK domain
SMART	SM00666	7.0E-25	805	888	IPR000270	PB1 domain
PROSITE profile	PS51745	25.337	805	888	IPR000270	PB1 domain
SuperFamily	SSF54277	7.57E-23	806	892	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.8E-22	806	885	No hit	No description
CDD	cd06407	2.35E-39	807	887	No hit	No description
Pfam	PF00564	1.2E-16	807	886	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MDDGIFSPAA IHGPSFASDM DFDYMNELLG EGCWLETVQG SDFSQQCPSD SNHLFNSSFL 60 WSPSDTFLGE NIFGQPQESN QERVSSSLPG GTSLDEPHLD TAATIQKTEQ QLVSFAGCSG 120 QPGYQTDETE IGRRWWIGPW ATAGLKISVM ERLVRAIRYI KDSSKDRDVL IQIWVPTDIN 180 GKRVLTTYDQ PYIVDSSSTS LSSYRSISLN FQFSAEKNSN VTEGMPGRVF LGKVPEWTPD 240 VRFFKSDEYA RVGYAQTFNV RGTLALPVFD RGSRTCLGVI EVVTTKQMVK AELDSVCQAL 300 QAVDLSSTES QSTEKAKTCV LSYQAALPEI LEVMKSACLM HKLPLAQTWM PCVQQGKEGC 360 RHSTENYIHC VSTVDAACYV ADPNVQGFHE ACSEHHLLRG QGVAGRAFTT NDPCFYDDIT 420 SLCKTEYPLS HHARMFGLHA AVAIRLRSVH TGAADFVLEF FLPTDCREPE EQKKMLGSLS 480 LIIQKASKSL RVVTDDELAK DTKTSISASV VPSNDAAVTP IMSTRSEGVF GQNPNVAPFV 540 QKEEPAEFLY EKSSVNQSNP LLGSSSLDHN TFGEGSFRDM GGVGDRKPSK AEKAITLEVL 600 QRHFAGSLKD AAKSLGVCPT TLKRICRNQG IKRWPSRKIK KVGHSLEKLQ RVIDSVQGPS 660 GTFQIGSFYS NFPELASPSN NSGITNQFSA SKLSNLSKSL SIQPEANAGS PPTTSCSQSS 720 SSSHSCSSGS QHKTSSWNSA VSEVGKESAR VGVLKRTRSD AQMNEMGHED PKLLPRSHSH 780 VTFSGTPNSE TLPPPPKLTR KALDGTRVKV SYGDDKIRIR MQNHWRLKDL RQEIARRFNV 840 EDSSEMQLKY LDDDSEWVLL TCDADWEECV DVCLSTSDDT IKLSLHAPTQ HLGRSPVSST 900 LCDQ*

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MDDGIFSPAA IHGPSFASDM DFDYMNELLG EGCWLETVQG SDFSQQCPSD SNHLFNSSFL  60
WSPSDTFLGE NIFGQPQESN QERVSSSLPG GTSLDEPHLD TAATIQKTEQ QLVSFAGCSG  120
QPGYQTDETE IGRRWWIGPW ATAGLKISVM ERLVRAIRYI KDSSKDRDVL IQIWVPTDIN  180
GKRVLTTYDQ PYIVDSSSTS LSSYRSISLN FQFSAEKNSN VTEGMPGRVF LGKVPEWTPD  240
VRFFKSDEYA RVGYAQTFNV RGTLALPVFD RGSRTCLGVI EVVTTKQMVK AELDSVCQAL  300
QAVDLSSTES QSTEKAKTCV LSYQAALPEI LEVMKSACLM HKLPLAQTWM PCVQQGKEGC  360
RHSTENYIHC VSTVDAACYV ADPNVQGFHE ACSEHHLLRG QGVAGRAFTT NDPCFYDDIT  420
SLCKTEYPLS HHARMFGLHA AVAIRLRSVH TGAADFVLEF FLPTDCREPE EQKKMLGSLS  480
LIIQKASKSL RVVTDDELAK DTKTSISASV VPSNDAAVTP IMSTRSEGVF GQNPNVAPFV  540
QKEEPAEFLY EKSSVNQSNP LLGSSSLDHN TFGEGSFRDM GGVGDRKPSK AEKAITLEVL  600
QRHFAGSLKD AAKSLGVCPT TLKRICRNQG IKRWPSRKIK KVGHSLEKLQ RVIDSVQGPS  660
GTFQIGSFYS NFPELASPSN NSGITNQFSA SKLSNLSKSL SIQPEANAGS PPTTSCSQSS  720
SSSHSCSSGS QHKTSSWNSA VSEVGKESAR VGVLKRTRSD AQMNEMGHED PKLLPRSHSH  780
VTFSGTPNSE TLPPPPKLTR KALDGTRVKV SYGDDKIRIR MQNHWRLKDL RQEIARRFNV  840
EDSSEMQLKY LDDDSEWVLL TCDADWEECV DVCLSTSDDT IKLSLHAPTQ HLGRSPVSST  900
LCDQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981348.1	0.0	PREDICTED: protein NLP4
Refseq	XP_017981349.1	0.0	PREDICTED: protein NLP4
TrEMBL	A0A438ETN8	0.0	A0A438ETN8_VITVI; Protein NLP2
STRING	EOY15260	0.0	(Theobroma cacao)
STRING	evm.model.supercontig_26.186	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0082s0024.1.p