PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0079s0107.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 622aa    MW: 67522.2 Da    PI: 7.8817
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0079s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.5e-922506212374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++ L+e+A a+++g+ e a ++++rl + ++p+g+p qRla y+  AL+++l++ +++        +++e +sse+  +++l+++ s ++
  Kaladp0079s0107.1.p 250 KQSLIEAAAAIADGKSESAAEIVTRLTQSSNPRGTPEQRLAYYMSLALKSKLTS-GEGQK------SAHEIRSSEHYESVQLLYQHSSCF 332
                          689**************************************************9.22222......2223447889999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
                          k+++l+aN aI e ++  + +H++Dfd++ G+Q+ +Llq L+ R++g+p s+RiT+v+  e+g    +++     +e+L+++ e++gvp+
  Kaladp0079s0107.1.p 333 KLGFLAANLAIIEGTADVKSLHVVDFDMGDGAQYHNLLQLLSLRKSGKPtSVRITAVDVGENGggggHERWSIIAKEKLSQLSERVGVPL 422
                          *********************************************77776*********999999965566666789************* PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          e ++ ++ r+ d++ ++L  +p+E++aVnl+ +l +l+desvs+e++rde+L+ vk+l++++v+vve+e+++n++++ +r++e++++y a
  Kaladp0079s0107.1.p 423 ELRT-LHLRVGDVSRKSLCSNPDEVVAVNLACSLSKLPDESVSTENKRDELLRRVKGLEARIVTVVEEEMNCNTAPLQTRVAECCSFYGA 511
                          ****.5999********************************************************************************* PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.... 352
                          l++s++++    + eri vE+  lgr+ vn vaceg +r+er+e l+kWr+r+++aGF+  p+s++++++ ++ +++ +  g rv     
  Kaladp0079s0107.1.p 512 LLESMDSG--GMEAERIRVEEG-LGRRMVNTVACEGGDRVERCEVLGKWRARMGMAGFELKPVSQNVVDSLSSRINNNS-GGTRVGcplf 597
                          *****888..5689********.****************************************************9999.5555543344 PP

                 GRAS 353 ..eesgslvlgWkdrpLvsvSaWr 374
                            e +g +++gW++r L+++SaWr
  Kaladp0079s0107.1.p 598 vkEANGGVCFGWMGRILTVTSAWR 621
                          4388*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.667223596IPR005202Transcription factor GRAS
PfamPF035141.9E-89250621IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MSSGGLPDFF SAAASSSSAG RPVNASSSSS SSVVIQQQQQ PVMYHRPQFL PDHSQSGLGK  60
RTLAEFQNQR QQFQHQNPLL LLRQQQPQQQ GVGAFPMRSV KPRIYQNPSP ISPLSPIDLL  120
PEMGAAFMGR RQNSIGFGRG SVVPTPTTNL SHHHNRVFVA GNSKEEVTET EKKMMNRLHE  180
LERQLLGDDN DDARDSVSVI TGNEWSDTIQ NLIVTNQKPP PPQQVNTSSP TSSSSSCSSV  240
VASPLPICAK QSLIEAAAAI ADGKSESAAE IVTRLTQSSN PRGTPEQRLA YYMSLALKSK  300
LTSGEGQKSA HEIRSSEHYE SVQLLYQHSS CFKLGFLAAN LAIIEGTADV KSLHVVDFDM  360
GDGAQYHNLL QLLSLRKSGK PTSVRITAVD VGENGGGGGH ERWSIIAKEK LSQLSERVGV  420
PLELRTLHLR VGDVSRKSLC SNPDEVVAVN LACSLSKLPD ESVSTENKRD ELLRRVKGLE  480
ARIVTVVEEE MNCNTAPLQT RVAECCSFYG ALLESMDSGG MEAERIRVEE GLGRRMVNTV  540
ACEGGDRVER CEVLGKWRAR MGMAGFELKP VSQNVVDSLS SRINNNSGGT RVGCPLFVKE  600
ANGGVCFGWM GRILTVTSAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-382516216375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.11e-176scarecrow-like protein 8
TrEMBLB9RIU51e-175B9RIU5_RICCO; DELLA protein GAI, putative
STRINGXP_002513664.11e-176(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-123SCARECROW-like 8