PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0078s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 38781.4 Da PI: 9.1432 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.3 | 1.6e-45 | 18 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.....................vikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 lppGfrF Ptd el+++yL +k+++++++ ++ + evd++++ePw++p ++ + ke+yf+s+rd+kya Kaladp0078s0017.1.p 18 LPPGFRFYPTDGELICDYLMNKISKTSTSSSSsircrdsnntdssssaalhvpQLIEVDLNTSEPWEIPGRACVGGKECYFYSQRDRKYA 107 79**********************999555445677778899999999999866999************7777799************** PP NAM 70 tgkrknratksgyWkatgkdkevlskkgel............vglkktLvfykgrapkgektdWvmheyrl 128 tg r+nratk+gyWkatgkdk+v++++++ vg++ktLvfy+grap+g+kt+Wvmhe+rl Kaladp0078s0017.1.p 108 TGMRTNRATKTGYWKATGKDKAVYCSSSSRspspspspspslVGMRKTLVFYRGRAPRGRKTEWVMHEFRL 178 *************************84433567777778888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-50 | 10 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.801 | 18 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 19 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MRKQRRSSSS IEVVEEKLPP GFRFYPTDGE LICDYLMNKI SKTSTSSSSS IRCRDSNNTD 60 SSSSAALHVP QLIEVDLNTS EPWEIPGRAC VGGKECYFYS QRDRKYATGM RTNRATKTGY 120 WKATGKDKAV YCSSSSRSPS PSPSPSPSLV GMRKTLVFYR GRAPRGRKTE WVMHEFRLLK 180 PPSLLSSSIK EPEDWVLCRV FHKHISGSRC ITQPASSPLP QLTHDPYLPL PQPQTDSSTI 240 ISMNQDRHHS NGDHQQVPCF SILSSHSQTM SYSYAAILSN APSFPIKPSN VEVVFDHHIT 300 MTATTDDSAS NKLKSKEDSL NNFDGGNGNS SSGIYLSESM WKHHQQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 18 | 209 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 18 | 209 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 18 | 209 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 18 | 209 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 18 | 209 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-43 | 18 | 209 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 18 | 209 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q84TE6 | 4e-73 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2G2Z6Q3 | 3e-75 | A0A2G2Z6Q3_CAPAN; NAC domain-containing protein 21/22 (Fragment) | ||||
TrEMBL | A0A498ITN5 | 3e-75 | A0A498ITN5_MALDO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 8e-72 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0078s0017.1.p |