PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0270.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 330aa    MW: 35269.9 Da    PI: 8.2697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0270.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-071181027
                         GGTS--TTTTT-SS-SSS CS
              zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                         + t  Ck+G++CkF H++
  Kaladp0076s0270.3.p  1 MTTNNCKFGASCKFDHPK 18
                         67899***********96 PP
2zf-CCCH37.15.2e-123762227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         ++++C++f rtG+Ck+G++CkF H++
  Kaladp0076s0270.3.p 37 GEKECSYFVRTGQCKFGATCKFDHPQ 62
                         7899********************97 PP
3zf-CCCH24.35.6e-08207231226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++Cr+++++G+CkyG +Ck+ H+
  Kaladp0076s0270.3.p 207 DQPECRNYFKYGYCKYGFSCKYRHP 231
                          689*******************998 PP
4zf-CCCH24.93.6e-08254276325
                          S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           + C ++a  G Ck+G++CkF+H
  Kaladp0076s0270.3.p 254 VPYCTNYAHQGVCKFGSSCKFNH 276
                          578******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.512119IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-5118IPR000571Zinc finger, CCCH-type
SMARTSM0035678218IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-63562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0093563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-53663IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-93762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-44161IPR000571Zinc finger, CCCH-type
SMARTSM003560.02205232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15205233IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5207231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5209232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4211231IPR000571Zinc finger, CCCH-type
SMARTSM003560.022251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.521251279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5254278IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-6254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4257277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTTNNCKFGA SCKFDHPKHD GETKICLNYL GYPLRPGEKE CSYFVRTGQC KFGATCKFDH  60
PQPVHSHVST ATLTPGDASA PLPPKSNTQV HPPPTPAPQP YGVITGNWQV PRTPIFLPAP  120
YPCIQGTYGP TFLQPGVFSM PSWGPYPIQM SPVVSPRIQP PIGSGPRYDM SHLSAPASPY  180
AGPYPLIPTA GAFSIIQKEP ILSERPDQPE CRNYFKYGYC KYGFSCKYRH PSEVNASKPT  240
PPHGTTEPPL RAGVPYCTNY AHQGVCKFGS SCKFNHQTGA GTLSYSPSAS SLADLPVAPC  300
PLECSVGTTA PSSSSSEPEI ASGSAKESA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267357.15e-91PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A314KY391e-89A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGcassava4.1_006608m3e-90(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-66C3H family protein