PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0270.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 400aa    MW: 42986.6 Da    PI: 8.422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.3e-123963327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ Cr+++++G C +G++C+F+H++
  Kaladp0076s0270.2.p 39 EVVCRYYMKNGVCGFGASCRFNHPR 63
                         679********************96 PP
2zf-CCCH26.31.3e-086988827
                         GGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                         f++ t  Ck+G++CkF H++
  Kaladp0076s0270.2.p 69 FYMTTNNCKFGASCKFDHPK 88
                         8*****************96 PP
3zf-CCCH36.86.6e-12107132227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C++f rtG+Ck+G++CkF H++
  Kaladp0076s0270.2.p 107 GEKECSYFVRTGQCKFGATCKFDHPQ 132
                          7899********************97 PP
4zf-CCCH23.97.2e-08277301226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++Cr+++++G+CkyG +Ck+ H+
  Kaladp0076s0270.2.p 277 DQPECRNYFKYGYCKYGFSCKYRHP 301
                          689*******************998 PP
5zf-CCCH24.54.6e-08324346325
                          S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           + C ++a  G Ck+G++CkF+H
  Kaladp0076s0270.2.p 324 VPYCTNYAHQGVCKFGSSCKFNH 346
                          578******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.2E-73663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9343664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-63864IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-93963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-64163IPR000571Zinc finger, CCCH-type
SMARTSM003567.96688IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-66988IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.5546989IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5106133IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9107132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4111131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15275303IPR000571Zinc finger, CCCH-type
SMARTSM003560.02275302IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5277301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5279302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4281301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.521321349IPR000571Zinc finger, CCCH-type
SMARTSM003560.022321348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5324348IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5324346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4327347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGSYGRNREA GGGSASDPQP LEEPMRKLRL SAYPERPSEV VCRYYMKNGV CGFGASCRFN  60
HPRDAAAAFY MTTNNCKFGA SCKFDHPKHD GETKICLNYL GYPLRPGEKE CSYFVRTGQC  120
KFGATCKFDH PQPVHSHVST ATLTPGDASA PLPPKSNTQV HPPPTPAPQP YGVITGNWQV  180
PRTPIFLPAP YPCIQGTYGP TFLQPGVFSM PSWGPYPIQM SPVVSPRIQP PIGSGPRYDM  240
SHLSAPASPY AGPYPLIPTA GAFSIIQKEP ILSERPDQPE CRNYFKYGYC KYGFSCKYRH  300
PSEVNASKPT PPHGTTEPPL RAGVPYCTNY AHQGVCKFGS SCKFNHQTGA GTLSYSPSAS  360
SLADLPVAPC PLECSVGTTA PSSSSSEPEI ASGSAKESA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.11e-110zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A2G9GS851e-109A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein
STRINGcassava4.1_006608m1e-109(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-84C3H family protein