PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0270.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 422aa    MW: 45402.3 Da    PI: 8.3078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.9e-123963327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ Cr+++++G C +G++C+F+H++
  Kaladp0076s0270.1.p 39 EVVCRYYMKNGVCGFGASCRFNHPR 63
                         679********************96 PP
2zf-CCCH37.25.1e-1286110327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++lC+f++ t  Ck+G++CkF H++
  Kaladp0076s0270.1.p  86 QPLCKFYMTTNNCKFGASCKFDHPK 110
                          79*********************96 PP
3zf-CCCH36.77.1e-12129154227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C++f rtG+Ck+G++CkF H++
  Kaladp0076s0270.1.p 129 GEKECSYFVRTGQCKFGATCKFDHPQ 154
                          7899********************97 PP
4zf-CCCH23.87.7e-08299323226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++Cr+++++G+CkyG +Ck+ H+
  Kaladp0076s0270.1.p 299 DQPECRNYFKYGYCKYGFSCKYRHP 323
                          689*******************998 PP
5zf-CCCH24.44.9e-08346368325
                          S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           + C ++a  G Ck+G++CkF+H
  Kaladp0076s0270.1.p 346 VPYCTNYAHQGVCKFGSSCKFNH 368
                          578******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.2E-73663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9343664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-63864IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-93963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-64163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4683111IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-583110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-584112IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-986110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-688112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009127155IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6127154IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9129154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4133153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15297325IPR000571Zinc finger, CCCH-type
SMARTSM003560.02297324IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5301324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4303323IPR000571Zinc finger, CCCH-type
SMARTSM003560.022343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.521343371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5346370IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5346368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4349369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGSYGRNREA GGGSASDPQP LEEPMRKLRL SAYPERPSEV VCRYYMKNGV CGFGASCRFN  60
HPRDAAAADA DVIKRGGEEH PERVGQPLCK FYMTTNNCKF GASCKFDHPK HDGETKICLN  120
YLGYPLRPGE KECSYFVRTG QCKFGATCKF DHPQPVHSHV STATLTPGDA SAPLPPKSNT  180
QVHPPPTPAP QPYGVITGNW QVPRTPIFLP APYPCIQGTY GPTFLQPGVF SMPSWGPYPI  240
QMSPVVSPRI QPPIGSGPRY DMSHLSAPAS PYAGPYPLIP TAGAFSIIQK EPILSERPDQ  300
PECRNYFKYG YCKYGFSCKY RHPSEVNASK PTPPHGTTEP PLRAGVPYCT NYAHQGVCKF  360
GSSCKFNHQT GAGTLSYSPS ASSLADLPVA PCPLECSVGT TAPSSSSSEP EIASGSAKES  420
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314462.11e-121zinc finger CCCH domain-containing protein 34
RefseqXP_021634959.11e-121zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A2G9GS851e-120A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein
STRINGXP_004296815.11e-120(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-94C3H family protein