PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0076s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 451aa MW: 48533.8 Da PI: 9.0845 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Kaladp0076s0190.1.p 59 FVCEVCSKGFQRDQNLQLHRRGH 81 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.28E-7 | 58 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 58 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.907 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 78 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.28E-7 | 131 | 157 | No hit | No description |
SMART | SM00355 | 91 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MDNMTSSPPT ASGAGAEVSI SSAARNPPPK KRRNLPGMPD PNAVVISLSP QSLMATNRFV 60 CEVCSKGFQR DQNLQLHRRG HNLPWRLKQR NSEGEMRRKV YVCPEPSCIH HNPSRALGDL 120 TGIKKHYSRK HGEKKWKCDR CSKKYAVKSD CKAHMKTCGT REYKCDCGTL FSRRDSFITH 180 RAFCDALAEE NTKVQTAALI VDDTKPNEDM VVASSPTPPS PVTPAPTTIS PLLSFQSPDL 240 TDNSAVVTDQ SLATLAASSN SSRCTSYISG KISVFASIFA PSTETTSTSF SHFMSPLSQS 300 DHPLPPSSPK GDTGFNHPLT SPSLYLTCNS FAPFPMIPDL PPDHHHYASR SHKPIMSATA 360 LLQKAAQMGA TTSAGSSLLC GFSLAMPSSS SSTHQGQSAD TSSITQWSSH AKADNSVVTA 420 GLRLGLGFPA SDLYVQPTTL DLLGLTKTRH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-32 | 132 | 194 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 3e-32 | 132 | 194 | 3 | 65 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664668.1 | 1e-145 | PREDICTED: protein indeterminate-domain 2 isoform X2 | ||||
Swissprot | Q9LVQ7 | 1e-110 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A438K1P9 | 1e-143 | A0A438K1P9_VITVI; Protein indeterminate-domain 1 | ||||
STRING | VIT_18s0001g12220.t01 | 1e-141 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 4e-98 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0076s0190.1.p |
Publications ? help Back to Top | |||
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