PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0003.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 274aa    MW: 29952.2 Da    PI: 6.5237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14112158455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  Er+RR +iN+++  L++l+P +      K++Ka++L +A+eY++ Lq
  Kaladp0076s0003.1.p 112 VHNLTERKRRGKINEKMRALQDLIPYC-----NKVDKAAMLDEAIEYLRVLQ 158
                          6*************************8.....6****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-20105171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20105175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-15111162No hitNo description
PfamPF000104.7E-12112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLVDTNNQTI DVMTKDLPGR PVERPASAFR AEGGLKVNQV SRNAQMERMD ADMNKKPAAA  60
ALPSLCSDNG GVNRLKRKHR DEEDWEDSSE DAEEESAIIR KVGSKRSRPT EVHNLTERKR  120
RGKINEKMRA LQDLIPYCNK VDKAAMLDEA IEYLRVLQLQ VQMMSMRAQM CALPMMAQPG  180
LQHPYTTAPS SQYLPLGMGY QAGALDMTTG FPAQAACFPG QFKPPPIFWN AAQGLPTSMP  240
GLLVPMPGAP PAPAPGSADE TPNSKDPLHE EAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019080611.11e-44PREDICTED: transcription factor APG isoform X4
TrEMBLA0A444XJ594e-42A0A444XJ59_ARAHY; Uncharacterized protein
TrEMBLF6I4I64e-42F6I4I6_VITVI; Uncharacterized protein
STRINGVIT_14s0060g00260.t017e-43(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.14e-32phytochrome interacting factor 3-like 1